PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_84C86F76D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 288aa    MW: 31493.7 Da    PI: 4.8672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_84C86F76D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-08162206655
                            HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +++ r RR+ri ++ +eL +l+P         Kl+ ae+L++A +++k Lq
  Traes_5DL_84C86F76D.1 162 SAAARERRRRISEKTAELSRLIPGgH------KLNTAEMLQEAARHVKLLQ 206
                            5677999999*************955......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.652156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-11160216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-9160213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5162206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-5172209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSMAPLSFRP TPTARPLFHC FHDGADRDVS FLQDVHPDVG DALLGFVYDP LDPAVNAGLD  60
EFLNIPPYDD DEDDEDGGQQ RCAKKPRAAG LEEDSWFDFT AADGSLAQKW DNACTQQVPE  120
FLPEFVLPLP PPPPPPPQVY PPFVRGADAK KLQAAGNGSS QSAAARERRR RISEKTAELS  180
RLIPGGHKLN TAEMLQEAAR HVKLLQAQVG MLTLLNNIED EKVPAMAQEH MHALLVCGGM  240
QERLAAEGKC LVPRALVDTI AKDAAVRSNA LVNRDLTRFT ESLAAEKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239355.11e-112uncharacterized protein LOC104585091
TrEMBLA0A3B6MRP50.0A0A3B6MRP5_WHEAT; Uncharacterized protein
TrEMBLA0A453KQR10.0A0A453KQR1_AEGTS; Uncharacterized protein
STRINGTraes_5DL_84C86F76D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-20bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]