PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_82E82F8F9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 255aa    MW: 27006.9 Da    PI: 7.5045
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_82E82F8F9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.7e-3062117255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ..kYRl 55 
                            pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ  +YR+
  Traes_5DL_82E82F8F9.1  62 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQvpMYRT 117
                            9*************************************************778997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-1459112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2660118IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-2262112IPR006447Myb domain, plants
PfamPF002499.0E-663111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MLSASGRLNG MLSDTLRSYG APGGGVGMGL GGHHHHLHGA QPFGLGSRFM PKLPAKRSMR  60
APRMRWTSTL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QVPMYRTVKS  120
TDKPAASGPT DGGSGDDDFP SAGGQAGSGG DNNMCPRPFP EHRSTSEGAA SSVGGDMDQS  180
SAGNASTRWS NSSRDPWVSS NSCNMDAHRS IGLSSPMENM EPCRSTGSQV SNHELSSPSL  240
EFTLGRPDWH GADHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1563119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1563119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1563119357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1563119357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3771030.0AK377103.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3148F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150556.11e-152probable transcription factor RL9
SwissprotQ0J2351e-118ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLA0A446U9D61e-157A0A446U9D6_TRITD; Uncharacterized protein
STRINGTraes_5DL_82E82F8F9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-55G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]