PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_76B9DF62C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 608aa MW: 66869.6 Da PI: 6.8838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.1 | 9.6e-06 | 351 | 371 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f+ G C +G+ C+FaH+ Traes_5DL_76B9DF62C.1 351 CFDFLNKGKCERGPECRFAHS 371 6678888*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd07380 | 3.74E-40 | 13 | 239 | No hit | No description |
PROSITE profile | PS50103 | 13.817 | 313 | 341 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 313 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-5 | 317 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-6 | 318 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 350 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-5 | 350 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF04677 | 1.3E-34 | 384 | 501 | IPR006768 | Cwf19-like, C-terminal domain-1 |
SuperFamily | SSF54197 | 5.67E-8 | 392 | 482 | IPR011146 | HIT-like domain |
Gene3D | G3DSA:3.30.428.10 | 7.7E-5 | 393 | 482 | IPR011146 | HIT-like domain |
Pfam | PF04676 | 6.7E-17 | 528 | 605 | IPR006767 | Cwf19-like protein, C-terminal domain-2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MAAAPSPAPP RILLAGDAHG RLHQLFKRVK SVNQSTGPFH ALLCVGQFFP PEAAEGDSPP 60 GDVADYLEGR AAVPIPTYFT GDYGPTAPRL LSKAAADARG FNPGGIEICP NLFWLRGSAL 120 FNLHGLSVAY LSGRKGLGGP GCYSQDDVDA LRALAEEPGI VDLFLTNEWP AGVVDGADTS 180 KVPPQVLDPQ GYDPVVAELV AEIKPRYHIA GTKGIFYARE PYVNDSSPHV TRFIGLANVG 240 NKEKQKFIHA ISPTPASTMS SADIHARPPN ATLSPYAAPA KSVHVEDTPK RPAESTDLQY 300 WRYDVKRQRQ GQTDGSLLCF KYTSSGSCPR GSKCNFRHDE EAREHCQRNV CFDFLNKGKC 360 ERGPECRFAH SLTEEAAARD AKPRSERRRV ESSCWFCLSS PDVESHLVIS IGDGYYCALA 420 KGPLVPDHVL VIPVEHFPTT IAMPVEPEAE LRRYKDSLGK YFEKRGKAAV YFEWVSQQSR 480 HANLQAVPVP LSKATNVKKI FHLAAQRLGF EFSVVNPDGD ANQGRELLRS QYDGKSGLFY 540 VELPDGTLLL HIIDSGEKFP AQFGREVLAG LLSMADRADW RNCKLSKEEE VKMVDDFKQG 600 FREFDPAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6id0_U | 3e-11 | 394 | 605 | 675 | 887 | CWF19-like protein 2 |
6id1_U | 3e-11 | 394 | 605 | 675 | 887 | CWF19-like protein 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK370143 | 0.0 | AK370143.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2105K14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156088.1 | 0.0 | zinc finger CCCH domain-containing protein 59 | ||||
Swissprot | Q69NK8 | 0.0 | C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59 | ||||
TrEMBL | A0A3B6MRH9 | 0.0 | A0A3B6MRH9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_76B9DF62C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10173 | 9 | 12 |
Publications ? help Back to Top | |||
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