PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_6EB179C88.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 348aa    MW: 38900.5 Da    PI: 5.2916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_6EB179C88.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35401312102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k+y++++d++++ ++sw++++nsfvv+d++ fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  Traes_5DL_6EB179C88.1  40 FLAKTYDMVDDPATDAVVSWTATSNSFVVWDPHLFATLLLPSYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 118
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++ikr+k 
  Traes_5DL_6EB179C88.1 119 QRHLLRNIKRRKP 131
                            ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6036129IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMNPVKVEGR PTPTPSPAAA GGGGAPRPMD GLGDAGPTPF LAKTYDMVDD PATDAVVSWT  60
ATSNSFVVWD PHLFATLLLP SYFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR  120
HLLRNIKRRK PTHGSQNQQS LASYLEVGNF GHDVEIDHLK RDKQLLMAEV VKLRQEQQNT  180
RSGLQAMEKR LQGTEQKQQQ MMSFLARVMQ NPVFIRQLIS QSEMRKELED AISNKRRRRI  240
DQGPEAVDSM GTGSTLEQGS HVMFEQQEPV DSFVNGVISD LESSSVDTKG AEVQQSVASS  300
RSEQLRGRPS GELNDDFWED LLHEGGLGEE ASNLVVPDDM NLLAEKLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262312910129Heat shock factor protein 1
5d5v_B1e-262312910129Heat shock factor protein 1
5d5v_D1e-262312910129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234239KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581480.0AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187328.10.0heat stress transcription factor A-2e-like
SwissprotQ6F3881e-180HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A3B6MZ470.0A0A3B6MZ47_WHEAT; Uncharacterized protein
STRINGTraes_5DL_6EB179C88.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.16e-98heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]