PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_6A12758FC.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 309aa MW: 32168.1 Da PI: 7.5567 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.2e-05 | 167 | 212 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + n+r r R +r+ +++ L++l+ + +K + a++L +A YI+ L Traes_5DL_6A12758FC.2 167 STNKRPRARKERLGERILALQQLVSPF-----GKTDTASVLHEALGYIRFL 212 679***********************8.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.411 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-12 | 167 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.2E-4 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.00E-5 | 169 | 217 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.0E-7 | 169 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVKEEEVMAE AGGRGYLDML GLGEEAMADY FLCLSPSSSA AVSTTTTTSA STHTVASPTC 60 ASYLAPLAAP CHHVLSFGGR AEQQYYGGGD IFGFQYYYHG AGGPAVPVAA PQKSSPTTDC 120 SSSISTMSSS PTATAASGIS TSKPQPSKKR GSRGSSDQRK AAPPAASTNK RPRARKERLG 180 ERILALQQLV SPFGKTDTAS VLHEALGYIR FLHDQVQVLS SPYMQRLPPS SAPPAPLPAV 240 VEPGDLRSRG LCLVPVSCTD HVAGGSGNGA DVWSSVPAMG MPATAEEEYA VAAGMLRGDR 300 DHHPSRQLA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375126 | 0.0 | AK375126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085P12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194103.1 | 0.0 | transcription factor bHLH113-like | ||||
Refseq | XP_020194104.1 | 0.0 | transcription factor bHLH113-like | ||||
TrEMBL | A0A3B6MZL6 | 0.0 | A0A3B6MZL6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_6A12758FC.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8082 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 9e-36 | bHLH family protein |
Publications ? help Back to Top | |||
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