PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_519330E98.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 347aa    MW: 39637.4 Da    PI: 9.813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_519330E98.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.00042257286130
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                            rr+++  +E +RR+ +N+ ++ Lr  + k+
  Traes_5DL_519330E98.2 257 RRAMARSIELQRREALNHHISVLRHKIWKL 286
                            7999********************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129518.804149249IPR001890RNA-binding, CRM domain
SuperFamilySSF754711.44E-22150248IPR001890RNA-binding, CRM domain
SMARTSM011032.6E-19151238IPR001890RNA-binding, CRM domain
Gene3DG3DSA:3.30.110.602.2E-22151248IPR001890RNA-binding, CRM domain
PfamPF019857.8E-21152238IPR001890RNA-binding, CRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
NGGGNLGGVL VSRNKEYIIF YRGNDFVTPK VRKVLVEQQQ HAITQQEQEE LARLKASASI  60
TAIPKALKNP LVAGTLAETR EATSRWGDSL NDELRKKENN CLILAKHTSL LKNMKRKLIL  120
AKTKVAKAEM ALAKVQEYLS PAELPTDLET VTDEERFLFR RIGLKMKAFL MLGRREVFDG  180
TVQNMHFHWK HRELVKIVVK GKTFEQVKHI AISLEAESGG VLIALDKTTK GYSIIFYRGK  240
NYKRPQVLKP RNLLTRRRAM ARSIELQRRE ALNHHISVLR HKIWKLKSQL VQMRAAGRKQ  300
DAELLQTVED DLSSDDDNIQ DEGDEAYLQT YGSDDEDDAD DDSNEYL
Functional Description ? help Back to Top
Source Description
UniProtBinds specific group II introns in chloroplasts and facilitates their splicing. Acts on subgroup IIB introns. The substrates of the subgroup IIB also require the CRM domain proteins CAF1 or CAF2, with a simultaneous binding of CFM3 and CAF1 or CAF2 (PubMed:18799595). May influence the biogenesis of the mitochondrial small ribosomal subunit (By similarity). {ECO:0000250|UniProtKB:F4J2U9, ECO:0000269|PubMed:18799595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184420.10.0CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like
SwissprotQ2R1U81e-105CFM3_ORYSJ; CRM-domain containing factor CFM3, chloroplastic/mitochondrial
TrEMBLA0A446U8E50.0A0A446U8E5_TRITD; Uncharacterized protein
TrEMBLA0A453KPC80.0A0A453KPC8_AEGTS; Uncharacterized protein
STRINGTraes_5DL_519330E98.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP230433
Publications ? help Back to Top
  1. Asakura Y,Bayraktar OA,Barkan A
    Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts.
    RNA, 2008. 14(11): p. 2319-32
    [PMID:18799595]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]