PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_51643AC9F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 427aa    MW: 46645.3 Da    PI: 8.7183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_51643AC9F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05264283120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++Cp C k+F+r  n++ H+
  Traes_5DL_51643AC9F.1 264 FSCPVCFKTFNRYNNMQMHM 283
                            89*****************9 PP
2zf-C2H2110.0014345365323
                            ETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                            C  Cgk F  k + ++H +++
  Traes_5DL_51643AC9F.1 345 CRRCGKAFAVKGDWRTHEKNC 365
                            *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-6264283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.32E-7264286No hitNo description
PROSITE profilePS501579.64264291IPR007087Zinc finger, C2H2
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SuperFamilySSF576675.32E-7338363No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4341363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538343363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
HKLSSQAWEA RSRSASYPEL EPWRTRTRPS SRTTNSTATT SHPRRCRRQW RPRRRLLRSP  60
PTPPAPSSPR RLLLPXXXXX XLREALPLLS LAPASRRSRE RRSGPGPDDS DDGDEEDGEE  120
GKQAPGPAAS SSLHHNQQLA GRQLFADLNS KATDDAMDSE AGGAAGDVTV ALHIGLPSAG  180
TAAGLISGIS AAARAARDDE EEEDDRVSRE LSGGGAEGDG DDDGENEAAV APVLGFASTP  240
IGRLNKGQYW IPTPTQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGI  300
QPTAMLRLPC YCCAPGCRNN VDHPRAXXXX XTHYKRKHGL KPFLCRRCGK AFAVKGDWRT  360
HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GQGHGALGGA GLDDDDDCAV SDVXXXXXXX  420
XVAARSP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180661.11e-176zinc finger protein WIP2-like
SwissprotQ9SVY11e-114ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3B6LP540.0A0A3B6LP54_WHEAT; Uncharacterized protein
TrEMBLA0A446UDH70.0A0A446UDH7_TRITD; Uncharacterized protein
STRINGTraes_5DL_51643AC9F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]