PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_4F38323F3.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 822aa MW: 91564 Da PI: 10.2875 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.4e-08 | 252 | 296 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v++ G+++W Ia +g+ Rt+ qc r+q Traes_5DL_4F38323F3.3 252 KAWTACEEKRLILTVQEKGMHNWINIAVALGTQRTPFQCLARYQR 296 58*****************************99**********96 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 305 | 349 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l+ av+ +G + W ++++ + gR ++qc +r++k l Traes_5DL_4F38323F3.3 305 RTWTKEEDLQLLAAVQTFGCN-WQLVSANLV-GRIGNQCSNRYRKTL 349 68*****************88.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 43.9 | 5.5e-14 | 357 | 402 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+++Ed++l vk++ +g+W++Ia+ ++ gRt qc +rw+++l Traes_5DL_4F38323F3.3 357 GRWSEDEDKRLMVSVKLFRSGSWNKIAQFVP-GRTQSQCSERWRNVL 402 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.9 | 7.1e-11 | 409 | 452 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g W +eEd +l+ v++ G+ W++Ia m +Rt+++c rw Traes_5DL_4F38323F3.3 409 GEWRPEEDSKLLASVHEVGPC-WSKIAGAMIPHRTDNMCLRRWKR 452 79*****************88.*****99999***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.808 | 147 | 245 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-5 | 149 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.21 | 151 | 247 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-5 | 217 | 232 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.01E-5 | 220 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-6 | 233 | 265 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.072 | 246 | 298 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.45E-19 | 250 | 345 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-4 | 250 | 300 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-6 | 252 | 296 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-13 | 266 | 306 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.246 | 299 | 353 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-12 | 303 | 351 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-12 | 305 | 348 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-9 | 306 | 349 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-15 | 307 | 349 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 10.557 | 351 | 402 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-19 | 352 | 404 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.71E-25 | 353 | 450 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 355 | 404 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-10 | 358 | 402 | No hit | No description |
Pfam | PF13921 | 3.8E-14 | 359 | 419 | No hit | No description |
PROSITE profile | PS51294 | 17.042 | 403 | 458 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 405 | 457 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-10 | 407 | 456 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.34E-9 | 410 | 453 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MKNEASKGGD DEFIAHQPGE EDVQKKNMNA NTQTGFPKAA LLLVDALKKN RACQKFIRRK 60 MINIEAKIEV NKDLRDRVKC LMDYQYSCRR SFGKVLCQKV DPRVRLISSQ KQSAQSAKNK 120 YKTPALLLGP AENPHVEKYK AVLKQFPVSL QKHPWSDIEK DRLAKGIKQQ YQEALIKDSM 180 KNGSSSGDFS AVDMAYALTN TVGNFEATPE ILRSVLPLVN WDYVAAMYLP GRSGAECESR 240 WLNHDDPLIN HKAWTACEEK RLILTVQEKG MHNWINIAVA LGTQRTPFQC LARYQRSLNP 300 HILKRTWTKE EDLQLLAAVQ TFGCNWQLVS ANLVGRIGNQ CSNRYRKTLI PERKRVGRWS 360 EDEDKRLMVS VKLFRSGSWN KIAQFVPGRT QSQCSERWRN VLDPDIEHGE WRPEEDSKLL 420 ASVHEVGPCW SKIAGAMIPH RTDNMCLRRW KRLCQDELPL MIAANQVKKS IFQTNFVDRE 480 TERPAICPSD FPSLVYSKVD KGDENTVSDQ VKKPRKRSRK SSVDNVPPND PSKSSADAAA 540 VNTTKRKPRK KLSGIGAENQ TGEDITVSDG VNNSSRFHHS KARKRKVTTD GDVVVQPGMR 600 GSISVDKELT LDILGGPISF DNEAPTNQKR DPTSVGKEGT AKKRTRGSVS VGNEGAVKKK 660 MRGSISVGDG RAVKNRMRGS VSIDNQGNTT KRKRVSRKSA KGNSKTDGEV NTCEMDLPSV 720 PSEAAAERGI HTGNTNKMKR KSTPRPKLIN MAEGTVDEYS RLADCISFAR GNGTSKNNSV 780 MPINNAVQSG GPSGENLQVA ISARLDPTSV ENGSTPNTQV VD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-22 | 224 | 475 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-22 | 224 | 475 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 511 | 519 | KKPRKRSRK |
2 | 640 | 646 | AKKRTRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368554 | 0.0 | AK368554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150877.1 | 0.0 | uncharacterized protein LOC109736068 | ||||
TrEMBL | A0A3B6MT90 | 0.0 | A0A3B6MT90_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_4F38323F3.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-141 | myb domain protein 4r1 |
Publications ? help Back to Top | |||
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