PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_4BA2CC560.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 334aa MW: 36594.9 Da PI: 9.0304 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.1e-32 | 117 | 172 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+ Traes_5DL_4BA2CC560.2 117 DGYNWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVETTV-DGQIAEIVYNGEHNHP 172 9***************************************.***************8 PP | |||||||
2 | WRKY | 85.7 | 4.1e-27 | 278 | 331 | 4 | 59 |
SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++WrKYGqK v+g+ fprsYYrC++a+C+++k vers+ d + +++tYeg+Hnh Traes_5DL_4BA2CC560.2 278 AFRWRKYGQKAVNGNSFPRSYYRCSTARCNARKFVERSS-D-NSLVTTYEGKHNHV 331 69*************************************.4.567799*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-27 | 110 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.871 | 110 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-25 | 111 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 115 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 117 | 172 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-27 | 275 | 332 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-24 | 276 | 331 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.768 | 276 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-21 | 277 | 330 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-22 | 278 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MQSQEKITPV KPVASRPFSS FTSFSKLLKD FTATGSAKIT SPGETVIVRR PKATRFAPPP 60 SDLSAGVAAS MLQDAGLDTT REKMVIDPEQ VVSCDQMTAF HDINKPIHSV KNRLSYDGYN 120 WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR KVETTVDGQI AEIVYNGEHN HPQPHPPKKP 180 VSSASTEVVV PDAHGNNDAG AESQLGECNL ALVSDPVAAA FKSSCDYVDE FGNTGPVYHC 240 NTSPKEKQSS IANGLPSSGE AAPAFQPPTE CRSSGDAAFR WRKYGQKAVN GNSFPRSYYR 300 CSTARCNARK FVERSSDNSL VTTYEGKHNH VQLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-18 | 117 | 330 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-18 | 117 | 330 | 18 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ863123 | 0.0 | DQ863123.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 40 (WRKY40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177870.1 | 0.0 | WRKY transcription factor 44-like | ||||
TrEMBL | A0A3B6MPM2 | 0.0 | A0A3B6MPM2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453KF96 | 0.0 | A0A453KF96_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1QRF5 | 0.0 | N1QRF5_AEGTA; WRKY transcription factor 44 | ||||
STRING | EMT01449 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_5DL_4BA2CC560.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 5e-51 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
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