PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_46E3AC8D6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 38111.2 Da PI: 8.117 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.7 | 1.2e-28 | 187 | 243 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+ k++e prsYY+Ct Cpvkk vers d+ + eitY+g+H+h+ Traes_5DL_46E3AC8D6.1 187 KDGYNWRKYGQKQLKDAESPRSYYKCTRDACPVKKIVERSF-DGCIKEITYKGRHTHP 243 8****************************************.***************8 PP | |||||||
2 | WRKY | 45.5 | 1.6e-14 | 313 | 340 | 1 | 28 |
---SS-EEEEEEE--TT-SS-EEEEEE- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCt 28 ldDgy+WrKYGqK+vkg++ prsYY+ t Traes_5DL_46E3AC8D6.1 313 LDDGYRWRKYGQKVVKGNPRPRSYYQKT 340 59***********************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-25 | 184 | 245 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-23 | 185 | 245 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-30 | 186 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-21 | 187 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.184 | 188 | 245 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-15 | 298 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-12 | 306 | 338 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.372 | 308 | 341 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-4 | 313 | 346 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-10 | 314 | 340 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MADRRGDAMR QQPPYSSGHQ ERVFDGGGGP AFGNDYDTAG SSYMALLGSG VNPQQSLPPQ 60 QAWGVDEVTP PTINLTPQFS MANYAPTSSY QQHQTTASFV SPLAANLHPY PSSSSSSYFQ 120 ADLPPQWPPR AMAPSPSSSL LPRNFTVHQT PAYPHHHEQQ MHMQLLRAAA LGGPHAAPAP 180 PIEQPAKDGY NWRKYGQKQL KDAESPRSYY KCTRDACPVK KIVERSFDGC IKEITYKGRH 240 THPRPPEPRR AGAEDAAAPS SAVGAHQEDE LSDDEDDGEE GHDIVSGAGG PAGQRVVRKH 300 KIILQTPSEV DLLDDGYRWR KYGQKVVKGN PRPRSYYQKT SFIWGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-15 | 304 | 341 | 8 | 45 | Probable WRKY transcription factor 4 |
2lex_A | 5e-15 | 304 | 341 | 8 | 45 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363803 | 0.0 | AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197516.1 | 0.0 | probable WRKY transcription factor 58 | ||||
TrEMBL | A0A3B6MZL2 | 0.0 | A0A3B6MZL2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_46E3AC8D6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 3e-31 | WRKY DNA-binding protein 26 |
Publications ? help Back to Top | |||
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