PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_45B242D3E1.2 | ||||||||
Common Name | CBF-D14, TAANSRALLhA_1179D19.g00007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23500.7 Da PI: 6.6718 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.5e-16 | 37 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ grWv+e+r+ g + r +lg+f tae+Aa+a++aa ++l g Traes_5DL_45B242D3E1.2 37 LYRGVRRRGPAGRWVCEVRVL---GmRGSRLWLGTFTTAEMAARAHDAAVLALSG 88 69***************9994...6555*********************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.45E-22 | 36 | 98 | No hit | No description |
Pfam | PF00847 | 1.3E-10 | 36 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-20 | 37 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.297 | 37 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-18 | 37 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-27 | 37 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-5 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDAVDAASPC DGHRTVWSEP PKRPAGRTKF KETRHPLYRG VRRRGPAGRW VCEVRVLGMR 60 GSRLWLGTFT TAEMAARAHD AAVLALSGRA ACLNFADSAW RMLPVLAGPF STAKEIKDAV 120 AVAVLAFQRQ HPVASMAPLS PARTTDDEKE IDGSPAPSAL FMSSELLNEH WFVGIDAGSC 180 YSEGLFMESP DTRPWREDLE LGGVETPPWS YLFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 35 | 95 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00452 | DAP | Transfer from AT4G25470 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF028779 | 0.0 | EF028779.1 Triticum aestivum CBFIVc-14.3 mRNA, complete cds. | |||
GenBank | HG530930 | 0.0 | HG530930.1 Triticum aestivum CBF-D14 gene for C-repeat binding factor, cultivar Eltan. | |||
GenBank | JF758494 | 0.0 | JF758494.1 Triticum aestivum clone 1179D19 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167745.1 | 1e-153 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q3T5N4 | 2e-47 | DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q8GUW4 | 2e-47 | DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B | ||||
TrEMBL | A0MPL7 | 1e-154 | A0MPL7_WHEAT; C-repeat binding factor | ||||
STRING | Traes_5DL_45B242D3E1.2 | 1e-155 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-33 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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