PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_43FC1B296.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 253aa    MW: 27829.9 Da    PI: 10.0896
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_43FC1B296.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.26.3e-40181562128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                            +pGfrF Pt++el+ +yL+++++g++  ++++vi+ vd+y+++P++L++    +  ++ ++w+fF++r++++ +g r+ r+t sgyWk
  Traes_5DL_43FC1B296.2  18 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSHHPSHLRSmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWK 105
                            69*********************9995666678**************8434532223566**************************** PP

                    NAM  85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atg+   v+s+       +++++g+k+t+vfy+grap+g kt+W m+ey++
  Traes_5DL_43FC1B296.2 106 ATGSPSCVFSSsssaaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 156
                            *********9988888877788***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4313186IPR003441NAC domain
PROSITE profilePS5100544.40717187IPR003441NAC domain
PfamPF023652.8E-2219155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMTTTSSGGA GGDLLGSTPG FRFYPTEDEL LGFYLRHRLA GTTRPHVDRV IPVVDVYSHH  60
PSHLRSMAGE ASVQDAEQWF FFCPRAEREL RGGRPARTTP SGYWKATGSP SCVFSSSSSA  120
AAGNSKVIGV KRTMVFYQGR APTGAKTTWK MNEYKAVAAD DDTTTGHQTT APLRLRNEFS  180
VCRLYISTGT LRSFDRRPLN TSGNGQAXXX XXXXXXXRVS DKPTTIKAGA HTVSCRNLEQ  240
FCYPKKTVLL YVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-271518513166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185458.11e-153NAC domain-containing protein 90-like isoform X1
SwissprotQ9FMR32e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A453KAA11e-152A0A453KAA1_AEGTS; Uncharacterized protein
STRINGTraes_5DL_43FC1B296.21e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-64NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]