PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_43FC1B296.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 27829.9 Da PI: 10.0896 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.2 | 6.3e-40 | 18 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +pGfrF Pt++el+ +yL+++++g++ ++++vi+ vd+y+++P++L++ + ++ ++w+fF++r++++ +g r+ r+t sgyWk Traes_5DL_43FC1B296.2 18 TPGFRFYPTEDELLGFYLRHRLAGTTrPHVDRVIPVVDVYSHHPSHLRSmageASVQDAEQWFFFCPRAERELRGGRPARTTPSGYWK 105 69*********************9995666678**************8434532223566**************************** PP NAM 85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+ v+s+ +++++g+k+t+vfy+grap+g kt+W m+ey++ Traes_5DL_43FC1B296.2 106 ATGSPSCVFSSsssaaagNSKVIGVKRTMVFYQGRAPTGAKTTWKMNEYKA 156 *********9988888877788***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-43 | 13 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.407 | 17 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-22 | 19 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMTTTSSGGA GGDLLGSTPG FRFYPTEDEL LGFYLRHRLA GTTRPHVDRV IPVVDVYSHH 60 PSHLRSMAGE ASVQDAEQWF FFCPRAEREL RGGRPARTTP SGYWKATGSP SCVFSSSSSA 120 AAGNSKVIGV KRTMVFYQGR APTGAKTTWK MNEYKAVAAD DDTTTGHQTT APLRLRNEFS 180 VCRLYISTGT LRSFDRRPLN TSGNGQAXXX XXXXXXXRVS DKPTTIKAGA HTVSCRNLEQ 240 FCYPKKTVLL YVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-27 | 15 | 185 | 13 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185458.1 | 1e-153 | NAC domain-containing protein 90-like isoform X1 | ||||
Swissprot | Q9FMR3 | 2e-68 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A453KAA1 | 1e-152 | A0A453KAA1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_43FC1B296.2 | 1e-180 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-64 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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