PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_3FF4E75CD.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 168aa    MW: 18039.9 Da    PI: 11.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_3FF4E75CD.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00076183123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cg+ F +   L  H  +H
  Traes_5DL_3FF4E75CD.2 61 FVCKTCGRAFETFQALGGHRTSH 83
                           89*********999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-55787No hitNo description
PfamPF139126.3E-106185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4926188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGAGMKRARE EAPFVSLALS LSSDSSTSTT TSADSASALA ADAGKRTRRG RAVATSGEGE  60
FVCKTCGRAF ETFQALGGHR TSHLRGRHGL ELGVGVARAI KERKRQEDKQ HDCHIXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG GGAPGRRGPA ARLAPALR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696833e-88AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21.
GenBankAK3721983e-88AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16.
GenBankEU8125633e-88EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.13e-56zinc finger protein ZAT8-like
RefseqXP_020199616.12e-56zinc finger protein ZAT8-like, partial
TrEMBLA0A3B6N2837e-55A0A3B6N283_WHEAT; Uncharacterized protein
STRINGTraes_5DL_3FF4E75CD.26e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-08C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]