PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_3FBCC4C48.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 870aa    MW: 94082.5 Da    PI: 4.3035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_3FBCC4C48.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003780102223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +C++C+ +F ++  +++H+ + H
  Traes_5DL_3FBCC4C48.1  80 ECKKCNLTFEDQGAYVQHQLSfH 102
                            5******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028081102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MSLLGYVEAK PTTVQNNDVE VRDMSAVNTA GLHQQNDSTG DMQSAVSATS VTLPIHNGDS  60
QGQRQKPYKD EAPIEAVRKE CKKCNLTFED QGAYVQHQLS FHQRKAKRRK VDKSVGLGVG  120
KDGKLETQES QRTSEDKPGY FGHGVADVKS QGQSPAELFG GASSGDVGAQ LSLAAAPCGL  180
QEITGLPEQA EEPSAGEPVS VHQKDLPQET TGLPQQEKAL SATEPFAGHQ KEHVDNSGDH  240
EIHDGACHIA EEPLAFDVAS NLSTCKSPEP EVHEHDSSKD LEFSIADCSG SFDRSHEISK  300
IPQDVPCTTD APGEKSCADD PMDCADITLP KQVPEHCDML DHKFRGFPGE TGFNDQVENN  360
PLSANLDEPD LSSNSMEVDN SKIACKFGDV LNSTSSEYDK PVVDQTDRGV TLKNDAINID  420
DGMNIDVRIK EVNLNSCLDT ISSPVSGANC ETSNALHDGN RSSILAQCFG ASSNDDNVCQ  480
DESFVNQNNV SKTEIFVNQS NDMVYQSNLN MNPVSPPQIS VDYFTNCSMN SEIKNNDNRR  540
DDNAKEQFVN SRNMSSNEPG FDAEAYNNDI FTGAMAETSF AQLNNAMNMK TDYSSCYSIS  600
DLNTLTGGTG TDGIDFHGMR SSFVSGSTSR NEPNELDFDI KGSMLEALER SDSDLETQYN  660
GGDPAIDSLP AAGTSGTSVD DFMSMHTNFG SLTSLVRSVE GGPMSRLIQD QVNLTGYLHM  720
LVLLNNSLEI SPSQLCDLQL GFGAQKQQIY PSFEEHLRMA SAGAPQFGNM GRHNPMPVPV  780
PVPEPTLMLG YEPTLMLGYA PQFGSCPPVQ LGWDLSKMVG VLQSVCVWCN TRFQHFGTAE  840
QQNDSVGFIC PACKDKTSGH LGTLNNGSLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102109QRKAKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3722730.0AK372273.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148N06.
GenBankAK3746780.0AK374678.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3072I09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176734.10.0uncharacterized protein LOC109762306
TrEMBLA0A3B6MUD80.0A0A3B6MUD8_WHEAT; Uncharacterized protein
STRINGTraes_5DL_3FBCC4C48.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]