PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_3EC609F62.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 250aa    MW: 27073.9 Da    PI: 6.6261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_3EC609F62.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.77e-781239120371
                   GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlv 207
                            +qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef + va++  +l++e+L v ++Ea+aV++ 
  Traes_5DL_3EC609F62.1   1 MQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWL 83 
                            69****************************....***************************.7************************* PP

                   GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                            +  h+l+d ++s ++    +L l+k+l Pkvv++veq++ h ++sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+
  Traes_5DL_3EC609F62.1  84 H--HSLYDVTGSDSN----TLCLIKRLAPKVVTMVEQDLRH-TGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIR 164
                            9..999999999999....**********************.889******************************************* PP

                   GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                            nv+a  g +r+ + + ++ Wr+ l ++GF++++l  +aa+qa lll +++sdgy++ ee+g+l lgWkd +L++++
  Traes_5DL_3EC609F62.1 165 NVLAVGGPSRTGDVK-FGCWRDSLARSGFGAASLAGSAAAQAALLLGMFPSDGYTLVEENGALKLGWKDLTLLTAC 239
                            *********999887.********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.5861222IPR005202Transcription factor GRAS
PfamPF035142.4E-751239IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD  60
KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL IKRLAPKVVT MVEQDLRHTG  120
SFLARFVEAI HYYSALFDSL DASYGEDSPE RHVVEQQLLS REIRNVLAVG GPSRTGDVKF  180
GCWRDSLARS GFGAASLAGS AAAQAALLLG MFPSDGYTLV EENGALKLGW KDLTLLTACS  240
NLVEKEKKTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1411240138377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598270.0AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186306.11e-172protein SCARECROW 1-like
SwissprotQ2RB591e-157SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A446U3H80.0A0A446U3H8_TRITD; Uncharacterized protein
STRINGTraes_5DL_3EC609F62.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-125GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]