PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_26D7767C0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 23003.6 Da PI: 7.7594 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.9 | 3.2e-43 | 2 | 113 | 17 | 128 |
NAM 17 eyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +yLk+kv+g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ +++ +g+ Traes_5DL_26D7767C0.1 2 YYLKRKVHGQSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRSINY-QKRSIGM 87 8*************.99**************84335556888*************************************9.9999*** PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 kktLvfy+grap+g +++Wvmheyr+ Traes_5DL_26D7767C0.1 88 KKTLVFYQGRAPQGIRSNWVMHEYRI 113 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 7.3E-20 | 1 | 113 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.818 | 1 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-51 | 2 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
NYYLKRKVHG QSIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR DRKYPNGCRT 60 NRATRAGYWK STGKDRSINY QKRSIGMKKT LVFYQGRAPQ GIRSNWVMHE YRIEESECNN 120 TMGVQDSYAL CRVFKKNVPA GEFEKQGECS SSQAKANQEQ VTDFEDAGES STANENDKDN 180 SWMQFIVEDL WCSNKTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-44 | 3 | 140 | 34 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-44 | 3 | 140 | 34 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-44 | 3 | 140 | 34 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-44 | 3 | 140 | 34 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 3 | 140 | 37 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-44 | 3 | 140 | 34 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-44 | 3 | 140 | 34 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186594.1 | 1e-148 | NAC domain-containing protein 86-like | ||||
Swissprot | Q9FFI5 | 1e-70 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A3B6MWA8 | 1e-146 | A0A3B6MWA8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453LKT4 | 1e-146 | A0A453LKT4_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CFV6 | 1e-146 | M8CFV6_AEGTA; NAC domain-containing protein 74 | ||||
STRING | Traes_5DL_26D7767C0.1 | 1e-148 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 9e-95 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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