PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5DL_1C6A8C773.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 299aa MW: 33219.2 Da PI: 4.8196

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5DL_1C6A8C773.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.7e-08	5	54	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 +++WT eE+ l +++++G g+W++I + R+ ++k++w+ Traes_5DL_1C6A8C773.1 5 KQKWTSEEEAALRAGIARYGVGSWRLILKDDDfrsilSCRSNVDLKDKWR 54 79**************************9988555555566666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.591	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-14	2	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-12	3	56	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-5	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-7	5	45	IPR001005	SANT/Myb domain
CDD	cd11660	2.76E-18	6	57	No hit	No description
SuperFamily	SSF46785	1.03E-12	119	191	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	3.8E-6	120	185	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	4.9E-14	121	191	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	19.299	122	190	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	8.8E-8	127	182	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGARKQKWTS EEEAALRAGI ARYGVGSWRL ILKDDDFRSI LSCRSNVDLK DKWRNINVFF 60 TESGSMDKGR TAMKKNRATP RRNDHPMAKS TVASDVDDEI VDEQPIASVS SELWNVSIPK 120 KSRSRLNNII LESVKNLNEP TGSHSTTIAK YIEEEYWPPS DFDRMLSANL KDLTTSGELI 180 EVNRKYRIAP APGSMYSEGR SPETLLLEDM QREPQKIESD DIKTFTKSQV DAELAHMITM 240 TAEEAASAAA RAVAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRNR NVTELMAQS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951930	0.0	JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020152791.1	0.0	single myb histone 5-like
Swissprot	C0HIA3	1e-112	SMH6_MAIZE; Single myb histone 6
TrEMBL	A0A3B6MYT2	0.0	A0A3B6MYT2_WHEAT; Uncharacterized protein
TrEMBL	A0A453LQ35	0.0	A0A453LQ35_AEGTS; Uncharacterized protein
STRING	Traes_5DL_1C6A8C773.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1324	38	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	3e-55	telomere repeat binding factor 1

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]