PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_026913547.1
Common NamebHLH39
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 486aa    MW: 51616.5 Da    PI: 6.8281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_026913547.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16310356455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Traes_5DL_026913547.1 310 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKTLQ 356
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-21304373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.165306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-17309360No hitNo description
Gene3DG3DSA:4.10.280.109.5E-22310364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-14310356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-17312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPPVVQED  60
EAGLWFPFAL ADSLDKDIFT DLFCEEPPGV DAGKAGRDGA PVLGDADRRS SQSSAVSAAS  120
DLMPPPKSTH VSCSSRQQSM SLADCGDNAG GVLSDLVQAR AGKAAMEEGA SSTLSAMGAS  180
FCGSNQVQVQ GAVSEQGRAG HTTAYGGSGA GSALPSAVGS GNANARGRGY EATVASSSGR  240
SNYSFGVTAT TATTGTEPTS TSNRSSKRKR GLDTEDSESP SEDAESESLA LERKPPQKLT  300
TARRSRAAEV HNLSERRRRD RINEKMRALQ ELIPHCNKTD KASMLDEAIE YLKTLQMQVQ  360
MMWMGSGMAP PAVMFPGMQM HQYLPQMGPP SMARMPFMAP PQQGHGVSLP EQYAHFLGVN  420
PHHLQPPAHH HHHQHFAQGV GYYPLGAKAL QQSPALHHVS NGNTGGGTPA ATANATPGNA  480
IHPNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314319ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0854220.0KX085422.1 Triticum aestivum stress-responsive bHLH transcription factor (bHLH39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181205.10.0transcription factor PIF1-like
TrEMBLA0A453LQC80.0A0A453LQC8_AEGTS; Uncharacterized protein
TrEMBLW5FPS90.0W5FPS9_WHEAT; Stress-responsive bHLH transcription factor
STRINGTraes_5DL_026913547.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-35phytochrome interacting factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Zhai Y, et al.
    The wheat transcription factor, TabHLH39, improves tolerance to multiple abiotic stressors in transgenic plants.
    Biochem. Biophys. Res. Commun., 2016. 473(4): p. 1321-7
    [PMID:27091431]