PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_0107C8C3A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 201aa    MW: 21318.2 Da    PI: 10.4305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_0107C8C3A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00012344627
                           HHHHHHHHHHHHHHHHHHHCTS CS
                    HLH  6 nerErrRRdriNsafeeLrell 27
                           + +Er+RR+++N  + +L +l+
  Traes_5DL_0107C8C3A.1 23 KTVERNRRNQMNALYYRLDTLV 44
                           679***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-62298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.05E-522108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAMPPPPPPP LYPATAGGKP ERKTVERNRR NQMNALYYRL DTLVRAGGAA PSPAVLMILY  60
VQPAAATRPD RLGEAAAYIS RTAERVERLK DRKRELTAAR AASTTELGTG SGSSSGAATV  120
MVEVQHLGSG LHGILVTGAP PSDGSMFHRA VRAVEEAGGE VQNAHFSVVG ARAVYTIHTL  180
ENSKAASRGW CKGSRKQYVD A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200618.16e-90uncharacterized protein LOC109786457
TrEMBLA0A453M9Y81e-143A0A453M9Y8_AEGTS; Uncharacterized protein
STRINGTraes_5DL_0107C8C3A.11e-144(Triticum aestivum)
STRINGTraes_5DL_0107C8C3A1.11e-144(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-15bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]