PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_E34970DA3.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 288aa MW: 32270.9 Da PI: 7.938

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_E34970DA3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.8	1e-09	46	68	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++r G Ck+ +C+F+H+ Traes_5BS_E34970DA3.1 46 KECPYYMRIGSCKFATNCRFHHP 68 68********************9 PP
2	zf-CCCH	21.8	3.2e-07	191	217	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ ++Ck++H++ Traes_5BS_E34970DA3.1 191 PGQPECQHFVKSGFCKFKAKCKYHHPR 217 5789*********************96 PP
3	zf-CCCH	27.3	6.2e-09	238	263	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ Traes_5BS_E34970DA3.1 238 DQPVCTYYERYGVCKFGPACMYNHPF 263 6899********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0017	42	69	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.817	42	70	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	43	69	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-6	46	68	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-4	48	67	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.001	190	217	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.502	190	218	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	192	217	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-5	194	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	196	217	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	236	263	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.53	236	264	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	238	263	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-5	238	264	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVIWCQNQNA CMVEPTVDKL KLYQRCCFLN WIFHANVVFM ILQGGKECPY YMRIGSCKFA 60 TNCRFHHPDP TNVVSRDPML EHENGDIPQQ NVQASSQLNV PVWPADRRAL NEHCAPFLAP 120 ASSYSAGMIP PRGMYPSPEW SGCHQVPLGP YYPPGISFHH FPAPPVNHPM YRGADVPGHQ 180 ELPSDEYPER PGQPECQHFV KSGFCKFKAK CKYHHPRSLV PPPTAGALSP LGLPLRPDQP 240 VCTYYERYGV CKFGPACMYN HPFNFGHPVS AAGPPLSAQY LTSGNYTV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370517	0.0	AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179364.1	1e-177	zinc finger CCCH domain-containing protein 65-like isoform X1
Refseq	XP_020179365.1	1e-177	zinc finger CCCH domain-containing protein 65-like isoform X2
Swissprot	Q2QTY2	1e-130	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A446U0G2	0.0	A0A446U0G2_TRITD; Uncharacterized protein
STRING	Traes_5BS_E34970DA3.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-45	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]