PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_D5FD1D5CE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 838aa MW: 96488.1 Da PI: 7.2797 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63 | 8.9e-20 | 203 | 284 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY++YA +GF ++++++++ +k++ C+++gk+++ ++ +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l Traes_5BS_D5FD1D5CE.2 203 FYSTYALLTGFVAKRNSNYRR------KKYHIECNRSGKPTPARNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPL 282 9****************9999......5789***********9998.9**********************.9**************** PP FAR1 90 ap 91 +p Traes_5BS_D5FD1D5CE.2 283 CP 284 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-17 | 203 | 284 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.5E-22 | 424 | 508 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.493 | 707 | 743 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAVLVFWRDE GEEGDAWQFI MTGMVTELDK PGAETADNST KKRRTCRVAD DQGSPVPELH 60 RKKASKNAAE TMSSASELSK EPVGKQSMTE ERPEPTGDSY EELSSDSIEK NTDGVLADEA 120 DKETNSVDHS LQQAEEQNQL HDNVENIEMV NRNPSESDSD SSSGSDSDSE LGKYFYPKFE 180 ELEAARKPEP GMKFQTLEDA NGFYSTYALL TGFVAKRNSN YRRKKYHIEC NRSGKPTPAR 240 NPNRKRKINS FERTNCQAKV IVKLTKGQWE FATVRNEHNH PLCPNPSLAR FFLSQKHMSS 300 EEKSFLKVLQ QCKIPPSKIL RIFRRMRSSF GNISFKKQGP VSSARSSSEN IPSKKKDPVS 360 LQCTEQRKTE NSDVESALKH FKELELRNPS FFYIKQTDED NVVRSIFWTD ARSRMDYDIF 420 GDFISVDTTY TTNRHNLPVA TIIGINNHGR TLLLGCALLR DGRAETFKWM FQTLLQVMGG 480 KIPGSIITNQ DEPLGRAIAE VLPQVRLRFW KCDVMGKAHE RIAAFMAARG NIKLELDSLV 540 DNSLTEMEFE EGWSSLIERY DASKNEYLQF MWRIRKIWAP VYFRQDFYPF AESLGRGEGM 600 NIVLFRNYVL PKDRIEKFIE RYEEIQKTTL KTDDEDRRQA RTVPSCFSLQ PIEKHASTIY 660 TRQIFLKVQR ELLHSTAFDV QVVKKGSVYR LERAFNYENP EFDRNAFEVF VDPVSNTFIC 720 QCAKFARDRL LCCHIFRLFT QLGINEIPAQ YIVPRWTDKF KEEKAKQYTE KCLEKADSTA 780 RYEMLMSKMA DLSKKICSDG AKCNTFMLEF DSIQEKLLAT EGENPRNSDN CMEIITTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188688.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A453JKB4 | 0.0 | A0A453JKB4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BS_D5FD1D5CE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 3e-72 | FAR1 family protein |
Publications ? help Back to Top | |||
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