PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_C9EA93E10.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 377aa    MW: 40386.8 Da    PI: 7.944
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_C9EA93E10.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32233288156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH+rFv a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  Traes_5BS_C9EA93E10.1 233 KARRCWSPELHRRFVAALQRLGGPQVATPKQIREMMKVDGLTNDEVKSHLQKYRLH 288
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.196230290IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-29230291IPR009057Homeodomain-like
SuperFamilySSF466893.34E-17231291IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26233288IPR006447Myb domain, plants
PfamPF002491.3E-7235286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGSSAVQKEA VVLNGGGSGA GEDHRLRALA ARTVTDSLRA AVARSSAADK AARLEECARS  60
LEAEKAKMEV FRRELPISVH LIADVIEWLK DEVAQHRRPA PDQLLAPAPS PSPAPPEKRK  120
AEVVKTEADA SDKRSWMSSA QLWTCGSHSS TSNSNGDSVK KHAQKVSNAF MPLNGLPTLA  180
KSSERPEAAA MAVPELSFSS PAIDAPCPAA PSADSSAVTD AGAQREQQSA QRKARRCWSP  240
ELHRRFVAAL QRLGGPQVAT PKQIREMMKV DGLTNDEVKS HLQKYRLHTR RASDGDQQQS  300
ASAGQWPRPE QYTTSQHSSS QSGSPQGPLQ LTVSSRGMSV TVGDSCDGGE ENEEEDGKSA  360
SYSWEMQQNG TKASLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519510.0JF951951.1 Triticum aestivum clone TaMYB68 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.10.0myb family transcription factor EFM-like
TrEMBLA0A3B6LH400.0A0A3B6LH40_WHEAT; Uncharacterized protein
TrEMBLA0A446TX080.0A0A446TX08_TRITD; Uncharacterized protein
STRINGTraes_5BS_C9EA93E10.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.13e-40G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]