PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_BCC406654.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 808aa MW: 92737.4 Da PI: 5.1621

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_BCC406654.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	94	181	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel Traes_5BS_BCC406654.2 94 LYCEYGHRMGFSVRKGKQYYFTGTKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHEL 179 7***************************************9988..9999********************************** PP FAR1 90 ap 91 +p Traes_5BS_BCC406654.2 180 VP 181 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-22	94	181	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-31	292	386	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	573	609	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-5	575	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	584	611	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
EGTSVPIEID GDAICLENVG DDEHEAQESG QVQIIYATEN GAQVAFDSQE QGTEEHSVRS 60 EEDQENNSVI PSREEFTEEL RTKVAYSEEQ AYRLYCEYGH RMGFSVRKGK QYYFTGTKVI 120 RTKDYYCSKE GLKDDEQLTE ANFNKPETRT NCKAMVRFRV DSEGQWRVIQ IIPEHNHELV 180 PPEEIHLLRS VRILSIPKPG TLNAMVNAEI QSMHDSLHVH DDGAECHSQV SIQSYALLEP 240 EDAEALVGYL KRRTIEQGMF YWDVQVDQEG QMTNFFWRDG RSRVDYDCFG DVVVFDTSYR 300 TNKYNMICAP FVGINHHMQN VMFGCAFMLD ESLTSYEWLL KSFLESMGGC PPKTIFTDQN 360 DTISKAIEVI LPETRHCICQ WHIEKNLQAH LDTPNASGTF HSMFMKCMKG CESEAEFEET 420 WAMMLQEHNL QDDQWLTDLF EQRHKWCTAL HKVAFDCGIR SLDRNFSSHN VLGSIADEST 480 SPTNFALEFD KLVGSWRTNE SVDDIQCKQI SPECSVKQNS ILQHAAEVYT HKVYKSLETE 540 FLDGCTGTSY QEMQCSETLY RFEFIMQSSP KVWIVFLDTS TMELSCSCKK FEMMGILCSH 600 ALNALGLKNL DKIPESYVLK RWTKYVRKGT YVFPSDQSPE QDCTEAVLAY RNRAMWFVYD 660 LLMKSKRHQD TRKLILDVLE NGEKSLESVC ELKRMHIHPS GKDKDASKAE KRKKKLSKQD 720 KNSRNVKQVV LPPPAESVFV DQPNQNQYFA TEDIATNSSI GRPFFYQEYP ATGVSASQIE 780 GHANIHSVPQ CAPAPQLCCL LRYIHQTS

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

EGTSVPIEID GDAICLENVG DDEHEAQESG QVQIIYATEN GAQVAFDSQE QGTEEHSVRS  60
EEDQENNSVI PSREEFTEEL RTKVAYSEEQ AYRLYCEYGH RMGFSVRKGK QYYFTGTKVI  120
RTKDYYCSKE GLKDDEQLTE ANFNKPETRT NCKAMVRFRV DSEGQWRVIQ IIPEHNHELV  180
PPEEIHLLRS VRILSIPKPG TLNAMVNAEI QSMHDSLHVH DDGAECHSQV SIQSYALLEP  240
EDAEALVGYL KRRTIEQGMF YWDVQVDQEG QMTNFFWRDG RSRVDYDCFG DVVVFDTSYR  300
TNKYNMICAP FVGINHHMQN VMFGCAFMLD ESLTSYEWLL KSFLESMGGC PPKTIFTDQN  360
DTISKAIEVI LPETRHCICQ WHIEKNLQAH LDTPNASGTF HSMFMKCMKG CESEAEFEET  420
WAMMLQEHNL QDDQWLTDLF EQRHKWCTAL HKVAFDCGIR SLDRNFSSHN VLGSIADEST  480
SPTNFALEFD KLVGSWRTNE SVDDIQCKQI SPECSVKQNS ILQHAAEVYT HKVYKSLETE  540
FLDGCTGTSY QEMQCSETLY RFEFIMQSSP KVWIVFLDTS TMELSCSCKK FEMMGILCSH  600
ALNALGLKNL DKIPESYVLK RWTKYVRKGT YVFPSDQSPE QDCTEAVLAY RNRAMWFVYD  660
LLMKSKRHQD TRKLILDVLE NGEKSLESVC ELKRMHIHPS GKDKDASKAE KRKKKLSKQD  720
KNSRNVKQVV LPPPAESVFV DQPNQNQYFA TEDIATNSSI GRPFFYQEYP ATGVSASQIE  780
GHANIHSVPQ CAPAPQLCCL LRYIHQTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358485	0.0	AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179689.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446TV09	0.0	A0A446TV09_TRITD; Uncharacterized protein
STRING	Traes_5BS_BCC406654.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-82	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]