PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_9E8C8FAB0.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 753aa MW: 86693.1 Da PI: 9.5371

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_9E8C8FAB0.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	731	752	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++++ C+y ++CkF+Hg Traes_5BS_9E8C8FAB0.2 731 MCRYYQQGLRCPYEGNCKFSHG 752 7****88**********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.9E-9	110	153	IPR003034	SAP domain
SuperFamily	SSF68906	2.93E-7	111	153	No hit	No description
PROSITE profile	PS50800	8.548	118	152	IPR003034	SAP domain
PROSITE profile	PS50103	13.544	726	753	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.08E-5	726	752	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0041	728	753	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-6	729	752	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-4	732	752	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGADGS EAETLADLYG PDAGSDEDPS 60 FDPAADKRAV GEAALWSGMA RLSISARKGR KGPVALEMGN EDIDLLAMVD KLMHDGQLEK 120 LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV 180 VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTVEI FWSKGYKPWP 240 PLHPLLIKGR NLYKDKTMRQ PWPDEKERSR VLEEKHARGF QARKSRDVRI HEKEIDKMRR 300 FNRLKDNKSK GKENMNQISS QTVVPQQKVV STDTVDQRFN EGRSDSLQQG EPGNARQQQI 360 SSKQNPAVHL FHQQFLYQGP SIQHGNPEKT RQQQILSRPT TSEQIFKHPT QHDNHRPTPA 420 QQMFKNPQEH NNHQQQQNKV LPQEGSTKTV SILGRAPCLH YGGSGNAVQQ QKLSKPTPME 480 QIRNQSQPLK HEHQNLVLPQ EDAKKGTNRV HSIDHGKAPC LQYAEPGNAM QQQSSRPALP 540 QQIKNPPQPP KHQHTEVLRQ EDGNRTYRVE PIDRRNNNYH NITYDESAFQ HRGTQHAKTH 600 QHGSNGHPHA HGDSQWHQPL RPRIQDFSSR NQEGDYRDHR QTAREQYNPQ EGHHHNQHGH 660 GQMIQEQYQP QKIHHQNGHD TWRINHNQYH PQENHHQNGH DSWRMNHNQY HPQENHHQNY 720 RYAQQFPAPK MCRYYQQGLR CPYEGNCKFS HGS

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGADGS EAETLADLYG PDAGSDEDPS  60
FDPAADKRAV GEAALWSGMA RLSISARKGR KGPVALEMGN EDIDLLAMVD KLMHDGQLEK  120
LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV  180
VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTVEI FWSKGYKPWP  240
PLHPLLIKGR NLYKDKTMRQ PWPDEKERSR VLEEKHARGF QARKSRDVRI HEKEIDKMRR  300
FNRLKDNKSK GKENMNQISS QTVVPQQKVV STDTVDQRFN EGRSDSLQQG EPGNARQQQI  360
SSKQNPAVHL FHQQFLYQGP SIQHGNPEKT RQQQILSRPT TSEQIFKHPT QHDNHRPTPA  420
QQMFKNPQEH NNHQQQQNKV LPQEGSTKTV SILGRAPCLH YGGSGNAVQQ QKLSKPTPME  480
QIRNQSQPLK HEHQNLVLPQ EDAKKGTNRV HSIDHGKAPC LQYAEPGNAM QQQSSRPALP  540
QQIKNPPQPP KHQHTEVLRQ EDGNRTYRVE PIDRRNNNYH NITYDESAFQ HRGTQHAKTH  600
QHGSNGHPHA HGDSQWHQPL RPRIQDFSSR NQEGDYRDHR QTAREQYNPQ EGHHHNQHGH  660
GQMIQEQYQP QKIHHQNGHD TWRINHNQYH PQENHHQNGH DSWRMNHNQY HPQENHHQNY  720
RYAQQFPAPK MCRYYQQGLR CPYEGNCKFS HGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK374966	0.0	AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020151518.1	0.0	zinc finger CCCH domain-containing protein 62-like isoform X2
Swissprot	Q338N2	0.0	C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBL	A0A3B6LH15	0.0	A0A3B6LH15_WHEAT; Uncharacterized protein
TrEMBL	A0A446TWU0	0.0	A0A446TWU0_TRITD; Uncharacterized protein
STRING	Traes_5BS_9E8C8FAB0.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13107	20	22

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]