PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_95A52A87F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 31683.1 Da PI: 5.6157 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 41 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ lv++++ +G g+W++ ar g++Rt+k+c++rw++yl Traes_5BS_95A52A87F.2 41 RGPWTVEEDLTLVNYIADHGDGRWNSLARAAGLKRTGKSCRLRWLNYL 88 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 94 | 137 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Traes_5BS_95A52A87F.2 94 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 137 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.424 | 36 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.69E-30 | 39 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 41 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 42 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-10 | 43 | 88 | No hit | No description |
PROSITE profile | PS51294 | 23.86 | 89 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 94 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 96 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.87E-11 | 96 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MASWSSSSTQ RSSGTTMPCS VVKLDDDLLR HEEEAAEEIR RGPWTVEEDL TLVNYIADHG 60 DGRWNSLARA AGLKRTGKSC RLRWLNYLRP DVKRGNFTAD EQLLILDLHS RWGNRWSKIA 120 QHLPGRTDNE IKNYWRTRVQ KHAKQLNCDA NSSKFKDAMK YLWMPRLADH HLQQASTVGD 180 HLVPGLPTSY MESSGMVTSS SDSFASESYD GARCTNASVG EMIQGGDWVQ EQNQGFWPES 240 NQTFQLQDSE LSGWVQGFSE SESLAENFWS LEDIWKMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-26 | 38 | 141 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360551 | 0.0 | AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162380.1 | 0.0 | myb-related protein 340-like | ||||
Swissprot | Q2QZJ8 | 1e-105 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A446TYL4 | 0.0 | A0A446TYL4_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BS_95A52A87F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 8e-77 | myb domain protein 112 |