PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BS_86C1C9A9F.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 508aa MW: 58210.6 Da PI: 6.9757 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.4 | 9.5e-13 | 152 | 223 | 1 | 82 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fYn Y+ e+GF +r +ks+++ +g+ +++fvC ++gk++e +++ ++r++C+a++++ +++d+ w+++k Traes_5BS_86C1C9A9F.2 152 DFYNLYSWETGFGIRYAKSRTN-VKGTRCMQEFVCCCSGKPKEANST---------SSRCQCQAMIRLLRTEDNGWHIDKYT 223 6*****************9998.66668899**********997666.........9*********************9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-9 | 152 | 223 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.7E-30 | 326 | 419 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence Send to blast |
MASAEAGESS MAAFVAERNE SVSSWGISNY PDSAVFGIDS ERLSVLREVV EDDPSGGFAD 60 LLDSVDVRTE TNTTDLEENR ASRMDNRYAS LDDKVGWVTR NRRVAVPDER ATSADRVTAL 120 ETALTGFAER KTDTVVTPSV GLTFDSINEA YDFYNLYSWE TGFGIRYAKS RTNVKGTRCM 180 QEFVCCCSGK PKEANSTSSR CQCQAMIRLL RTEDNGWHID KYTRELVSQL RENNVNLSKV 240 YNILATFFGR VENVPFTKRC LRTLCGKLSR EQADDDVRKT MAIFSEMKVQ DSDFTYNVQV 300 DEESRIRTLM WTNGRSKKQY HHFGDVVTFD TTYKTNLYDM PFGIFVGVNN HFQSVLYAGV 360 LMRDETVDTF KWIFDEFVKM MGGKRPITIL TDQARAMEVA IADVYPDATH RWCKWHILKK 420 AKESLGSNYT KKSDFRAEFH KLVHEMLTIE EFEDGWAALL EKYSLKNNTY LMQIYKTRQK 480 WAKPYFAGKF CARQTSTGRS ESANHMLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180988.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453CI69 | 0.0 | A0A453CI69_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5BS_86C1C9A9F.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-59 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|