PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_77558D2A3.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 300aa MW: 32454.9 Da PI: 7.282 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.2 | 5.2e-33 | 36 | 178 | 1 | 101 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................sss 68 aag+kdrhsk+ T++g+RdRR+Rls+++a++f+d+qd+LG+d++sk+ieWL+q+a +ai+ l+++ + Traes_5BS_77558D2A3.2 36 AAGGKDRHSKVVTSRGLRDRRIRLSVQTAIQFYDIQDRLGVDQPSKAIEWLIQAAATAIDGLPSLdcsfafpvaspaaedtaevsT-- 121 6899*************************************************************998866663333333322220.. PP TCP 69 saseceaesssssasnsssg......................................kaaksaakskksq 101 s+ s+g +aa + ++++++q Traes_5BS_77558D2A3.2 122 --------------SETSKGsvlslangpadndnaahqasaynggsangtfagllhcsNAADKPMQHQHQQ 178 ..............222222233344444444444444445555566666666655432222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-34 | 38 | 176 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.819 | 39 | 97 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEEADKDRNS CKRLRAVGGG GDSADAWRSF RVARAAAGGK DRHSKVVTSR GLRDRRIRLS 60 VQTAIQFYDI QDRLGVDQPS KAIEWLIQAA ATAIDGLPSL DCSFAFPVAS PAAEDTAEVS 120 TSETSKGSVL SLANGPADND NAAHQASAYN GGSANGTFAG LLHCSNAADK PMQHQHQQQQ 180 PTLAYYAAPG SHIAPMSFEM IPQLTFSQDQ QHCHHHHHHH HASVSFDRST LQSNTVSTPQ 240 WPPSQHPFLM QRFSAAPAEP SPMFPFFLGG NNAAAAAAPA AANAPERRLQ LWDFKEERKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 44 | 98 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101215 | 3e-77 | FP101215.1 Phyllostachys edulis cDNA clone: bphylf044o06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183767.1 | 0.0 | transcription factor PCF8-like | ||||
Refseq | XP_020183769.1 | 0.0 | transcription factor PCF8-like | ||||
Swissprot | A2ZMR9 | 3e-82 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A3B6LFT1 | 0.0 | A0A3B6LFT1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TU56 | 0.0 | A0A446TU56_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BS_77558D2A3.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 6e-32 | TCP family protein |
Publications ? help Back to Top | |||
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