PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_735791EC5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 286aa    MW: 31706.7 Da    PI: 6.6732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_735791EC5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.3e-1098120426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            + C +++++GtC++G +CkF+H+
  Traes_5BS_735791EC5.2  98 PDCTYYLKFGTCRFGMKCKFNHP 120
                            89********************8 PP
2zf-CCCH27.55.4e-09218240325
                            S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                            +e+C++++  G Ck+G++C++ H
  Traes_5BS_735791EC5.2 218 QEECKYYSTPGGCKFGESCRYLH 240
                            699*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.22594122IPR000571Zinc finger, CCCH-type
SMARTSM003560.06594121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-598122IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-798120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45215243IPR000571Zinc finger, CCCH-type
SMARTSM003560.027215242IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6219240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5219244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5221242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MADADAKAPP KSNLDADLIA SISPSSTSSG ARSAVAIESQ FADLAISDEL PKPSGWGDDA  60
VRGIAGSDEI TGEITGGKVQ PVATADSGPR FPQRHAEPDC TYYLKFGTCR FGMKCKFNHP  120
ARKKKNRVKE SGSSSIGSND ISNKAFPPDD DQTPKEEYED PAPNISAEVD LLKGRMEAMQ  180
LKIADETEKG FYLKKFKETE QKVAKEKRKE TVSEGSAQEE CKYYSTPGGC KFGESCRYLH  240
YEGKERKTEV AKVELNFLGL PLRPVSYIHF FNLYPWVRLT HIMLFW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705170.0AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179364.11e-168zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY22e-75C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A446U0P70.0A0A446U0P7_TRITD; Uncharacterized protein
STRINGTraes_5BS_735791EC5.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-14zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]