PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BS_69957E77A.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 791aa MW: 91657.1 Da PI: 5.528

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BS_69957E77A.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.3e-20	190	272	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +GF+ ++ +++ + +k ++ C+++gk++ + + +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+ Traes_5BS_69957E77A.2 190 RFYNTYALLTGFEAKRGTNYMR------KKFHLICNRSGKSRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHP 269 5***************9998......4678******99988.99999**************.9************* PP FAR1 89 lap 91 l+p Traes_5BS_69957E77A.2 270 LCP 272 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-17	190	272	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	394	485	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.087	676	712	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MGDMVTELDE AGVRNAENST EQREAYNVVD DEGSPVPLLM LPSGKEPVGN QSMTEGRLQP 60 AGDNYQEPVG KQSMTEGTLQ PAGDNDQQDP SSDSVEKNTE GLLADGQDQQ TNSVYHPLQQ 120 AEEENQLHDN VESNEMLRNN SSSETDSDSS SGSDSDSEVG KYFYPQIEQL EMAKQPEPGM 180 KFQTLEDAHR FYNTYALLTG FEAKRGTNYM RKKFHLICNR SGKSRATPDL QRKRKRKSIE 240 KTNCQAKVIV KLTKGQWEFT TVRNEHNHPL CPSASLTKFY LSHKHISTEE RSFLKVLQRT 300 RIPPNKVMKI FRRMRGSFGS IPFKKKDGTN LLCAEQHRKE NSDVGRMLMY FKEKELQDPS 360 FQCMKQTDED NIVRSVFWTD ARSRMDYEIF GDFLLFDTTY TTDRHNMLFA PIIGLNNHGK 420 TLLLGCALLH DESTETYKWM FETLLHVMED KMPVSIITNQ DEAMAKAIGE VMPQVRHRLC 480 KWDVLEKAQQ NISAFIAESG NIKADLDSLV DNSLTEKEFE EGWDALIERY GASENKYLQI 540 LWQRRKNWVP VYFREDFYPF VQSHGCDKGM NLLFNDYVLS IDRIEKFIER YEEIYKNITK 600 TDEEDRLQTG TVPSCFSLQP IEKHAADIYT RQIFLKVQRE LLHSTAFNVQ EVQRGAVYRL 660 NKVFNYENPE FDRNNFEVQV ESGTNAFKCQ CAKFTRDGVL CCHIFRLFTQ FGINQIPEQY 720 IVPRWTEKFR EEKEKQYKEK CSEQMDTTMR YTNFMTKMAD LGKTICSDGA KYDAFMLEVD 780 KIQENFATAQ K

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MGDMVTELDE AGVRNAENST EQREAYNVVD DEGSPVPLLM LPSGKEPVGN QSMTEGRLQP  60
AGDNYQEPVG KQSMTEGTLQ PAGDNDQQDP SSDSVEKNTE GLLADGQDQQ TNSVYHPLQQ  120
AEEENQLHDN VESNEMLRNN SSSETDSDSS SGSDSDSEVG KYFYPQIEQL EMAKQPEPGM  180
KFQTLEDAHR FYNTYALLTG FEAKRGTNYM RKKFHLICNR SGKSRATPDL QRKRKRKSIE  240
KTNCQAKVIV KLTKGQWEFT TVRNEHNHPL CPSASLTKFY LSHKHISTEE RSFLKVLQRT  300
RIPPNKVMKI FRRMRGSFGS IPFKKKDGTN LLCAEQHRKE NSDVGRMLMY FKEKELQDPS  360
FQCMKQTDED NIVRSVFWTD ARSRMDYEIF GDFLLFDTTY TTDRHNMLFA PIIGLNNHGK  420
TLLLGCALLH DESTETYKWM FETLLHVMED KMPVSIITNQ DEAMAKAIGE VMPQVRHRLC  480
KWDVLEKAQQ NISAFIAESG NIKADLDSLV DNSLTEKEFE EGWDALIERY GASENKYLQI  540
LWQRRKNWVP VYFREDFYPF VQSHGCDKGM NLLFNDYVLS IDRIEKFIER YEEIYKNITK  600
TDEEDRLQTG TVPSCFSLQP IEKHAADIYT RQIFLKVQRE LLHSTAFNVQ EVQRGAVYRL  660
NKVFNYENPE FDRNNFEVQV ESGTNAFKCQ CAKFTRDGVL CCHIFRLFTQ FGINQIPEQY  720
IVPRWTEKFR EEKEKQYKEK CSEQMDTTMR YTNFMTKMAD LGKTICSDGA KYDAFMLEVD  780
KIQENFATAQ K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	236	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360162	0.0	AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161795.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453JTM0	0.0	A0A453JTM0_AEGTS; Uncharacterized protein
STRING	Traes_5BS_69957E77A.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-80	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]