PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_360DD5644.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 879aa    MW: 95340 Da    PI: 7.0434
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_360DD5644.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.4e-1850107457
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++t+eq+e+Le++++++++ps  +r+++ + +    +++ +q+kvWFqNrR +ek+
  Traes_5BS_360DD5644.1  50 YVRYTPEQVEALERVYNECPKPSSLRRQQIIRDCpilcNIEPKQIKVWFQNRRCREKQ 107
                            6789****************************************************97 PP
2START160.99.5e-512004054204
                            HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                  START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                            ee+++++++ka+ ++  Wv++  +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l v  +g  g
  Traes_5BS_360DD5644.1 200 EETLTAFLSKATGTAVEWVQMMGMKPGPDSIGIIAVSHNCIGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVFPTGngG 286
                            68899***************************************************.8888888888********************* PP

                            EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                  START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                            +++l++++++a+++l++ Rdf+++Ry+  l +g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl+
  Traes_5BS_360DD5644.1 287 TIELIYMQTYAPTTLAApRDFWTLRYTCGLDDGSLVICERSLTQSTGGPSgpnTPGFIRAEVLPSGYLIRPCEGGGSMIHIVDHVDLD 374
                            ***************999****************************9999999*********************************** PP

                            SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 174 grlphwllrslvksglaegaktwvatlqrqc 204
                            +++++++lr+l++s  + ++k++ a+l++ +
  Traes_5BS_360DD5644.1 375 AWSVPEVLRPLYESPKIVAQKMTIAALRHIR 405
                            **************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.12744108IPR001356Homeobox domain
SMARTSM003895.9E-1546112IPR001356Homeobox domain
CDDcd000865.65E-1649109No hitNo description
SuperFamilySSF466896.84E-1649110IPR009057Homeodomain-like
PfamPF000465.7E-1650107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-1851107IPR009057Homeodomain-like
CDDcd146867.28E-6101140No hitNo description
PROSITE profilePS5084823.819188407IPR002913START domain
CDDcd088754.20E-67192408No hitNo description
Gene3DG3DSA:3.30.530.205.3E-23197380IPR023393START-like domain
SMARTSM002341.3E-42197407IPR002913START domain
SuperFamilySSF559617.97E-38198408No hitNo description
PfamPF018521.6E-48200405IPR002913START domain
PfamPF086701.0E-47734878IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MTRHRPWPPS HPPPPPHPLR VAAATGTDAG KKMARLSPGA AAPQVDTGKY VRYTPEQVEA  60
LERVYNECPK PSSLRRQQII RDCPILCNIE PKQIKVWFQN RRCREKQRKE SSRMQTVNRK  120
LTAMNKLLME ENDRLQKQVS RLVYENASVK SLKTKIHKAS AATTDTSCES VVTSGQQQAL  180
AAPRPQRDAN NPAGLLAIGE ETLTAFLSKA TGTAVEWVQM MGMKPGPDSI GIIAVSHNCI  240
GVAARACGLV SLEPTKVAEI LKDRPSWYRD CRCVDILHVF PTGNGGTIEL IYMQTYAPTT  300
LAAPRDFWTL RYTCGLDDGS LVICERSLTQ STGGPSGPNT PGFIRAEVLP SGYLIRPCEG  360
GGSMIHIVDH VDLDAWSVPE VLRPLYESPK IVAQKMTIAA LRHIRQIAHE SSGEIPYGAG  420
RQPAVLRTFS QRLSRGFNDA VSGFPDDGWS LLTSDGAEDI TITVNSSPNK LVGSHVSPSP  480
LFSAIGGGIL CAKASMLVQD VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL  540
RAGGFMGNQV ILPLAHTLEH EEFLEVLRLE GHGFSHDEVL LARDMYLLQL CSGVDENASG  600
ACAQLVFAPI DESFADDAPL LPSGFRVIPL DTKTDVPSAT RTLDLASALD VGSGGALRGS  660
GDSPGGCSTR SVLTIAFQFS FENHLRESVA AMARQYVRAV MASVQRVAMA IAPSRLGGSQ  720
IQLKHPPGSP EALTLASWIG RSYRAHTGEE IRWSDTEEAD SPLKLLWNHS DAILCCSLKP  780
APMFTFGNNA ALDMLETTLV NLQDISLEAI LDDEGRKALC AEFSKVMQQG FAYLPGGVCK  840
SSMGRQVSYE QAVAWKVVGD DVAGAPHCLA FMFVNWTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599100.0AK359910.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1106F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163543.10.0homeobox-leucine zipper protein HOX33-like
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A3B6LG920.0A0A3B6LG92_WHEAT; Uncharacterized protein
STRINGTraes_5BS_360DD5644.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]