PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_0F8DBB33D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 290aa    MW: 31606.2 Da    PI: 4.9441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_0F8DBB33D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-102202601055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+++k Lq
  Traes_5BS_0F8DBB33D.2 220 RKRRKRINERLKTLQTLVPNG-----TKVDMSTMLEEAVQHVKFLQ 260
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14212277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13215280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-12219264No hitNo description
PfamPF000103.1E-8220260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEAGGLISEA GWTMFDFPPQ GEESDIMAQL LGTFPSHAEE AQQDLPWYQA SHPSYYDSDV  60
HTSACSDSND GSFAVPSECM GYYLGDSSEA LGISSCTVPQ DLNLVQEQGA TEFLNMIPTI  120
SHDLFGKGES SCEGLDSVSA TNKRKHSVEE EINGQARGRK CARKAAPKRA KNAKQTEASC  180
CTSDNDSNAS QESADAGVTP KGKARAGRGA ATDPQSLYAR KRRKRINERL KTLQTLVPNG  240
TKVDMSTMLE EAVQHVKFLQ LQIKVLSSDE MWMYARIAYN GMNIGLDLNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192439.10.0transcription factor SPATULA-like
SwissprotQ7XHI92e-49BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A3B6LH670.0A0A3B6LH67_WHEAT; Uncharacterized protein
TrEMBLA0A446TX140.0A0A446TX14_TRITD; Uncharacterized protein
STRINGTraes_5BS_0F8DBB33D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-42bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]