PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_FC4E5FB7C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LSD
Protein Properties Length: 224aa    MW: 24844.7 Da    PI: 8.2601
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_FC4E5FB7C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.85e-10166190125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            C++Cr +L+YP GApsV+ a+C ++
  Traes_5BL_FC4E5FB7C.2 166 CHHCRRVLAYPSGAPSVCGAMCRAI 190
                            **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.8E-8163193IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-7166190IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
GEEPPVPQPL GALTCRSERS SRHGHLFTKC CHYLKDKEAR HSLELATVTD LRQGLRWPRS  60
LGVLPPLHSL FPSTGHRERS PPDLQRRCPR SRTAGRKSDW AATSLCECFF KGRRCSDHSM  120
ELLVHQGEHD PLEGVREPKM HLQILPLPEG EGDETGCTCM QSQIMCHHCR RVLAYPSGAP  180
SVCGAMCRAI TAVPPPAPAL SCVPVMRIVP SRICQNDICV QSSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5452343e-48EU545234.1 Hordeum vulgare subsp. vulgare clone SMEb0007a07 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGTraes_5BL_FC4E5FB7C.21e-162(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-11lsd one like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]