PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_FBC7AF288.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 278aa    MW: 30425.1 Da    PI: 9.5887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_FBC7AF288.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.6e-18126175355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr ++ +g+++AeIrd + ng   r++lg+f+++e+Aa a+++a+ +++g
  Traes_5BL_FBC7AF288.1 126 FRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSPEDAALAYDQAAFAIRG 175
                            89******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.286125183IPR001471AP2/ERF domain
SMARTSM003802.3E-35125189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-29125184IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21126184IPR016177DNA-binding domain
PfamPF008477.7E-12126175IPR001471AP2/ERF domain
CDDcd000186.08E-27126185No hitNo description
PRINTSPR003672.2E-9126137IPR001471AP2/ERF domain
PRINTSPR003672.2E-9149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEPSLHPFQP DISSTSRRLT TGVANFLTRR AMTTQQSHHP AAAFHQLPLH SPVSSTGSTD  60
STPWHHSAPT TPPLLPFDTN DADEMLLLHM LSQHQQHTHK AVAAPVKREA PDRQKAAQAA  120
SAGRAFRGVR KRPWGKYAAE IRDSTRNGVR VWLGTFDSPE DAALAYDQAA FAIRGGAAVL  180
NFPEDQVRRS LEGAADDVCG RAHGVSPVLA LKRRHSMRSR KATAAGRKVK AATRGMQPDG  240
MVMELEDLGT EYLEQLLGAS EDTTSINSWC WSHHSMTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25123183363ATERF1
3gcc_A4e-25123183363ATERF1
5wx9_A5e-251261851574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158423.11e-125ethylene-responsive transcription factor 1B-like
TrEMBLA0A446UYX80.0A0A446UYX8_TRITD; Uncharacterized protein
STRINGTraes_5BL_FBC7AF288.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-40ethylene response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]