PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_F17BA2960.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 355aa    MW: 38898.2 Da    PI: 6.7569
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_F17BA2960.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.7e-102603371490
                            T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
                     B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                            + l +p +f   h + +++    +l    g+sW v+l++    + ++ r+ l+ GW +F  +n+L++g+++ F+   g++++
  Traes_5BL_F17BA2960.1 260 QYLNVPMEFGVVHRYTEKK---KVLLRMGGESWAVNLKHgltpT-GRPRTSLRYGWDQFRVDNRLRAGETCFFRALpGDDGG 337
                            4577899998888776433...4566679********9988633.334589***********************54365555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-12239346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-17240350IPR015300DNA-binding pseudobarrel domain
CDDcd100177.60E-10243348No hitNo description
PfamPF023628.6E-8260336IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292262350IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAGDVATVF LEMSLGTRLA VSFPASSTTV ADLKRIVSHE HAASFPHLGQ IAVQSIKVDQ  60
GGSWFHLADS MAIRDTFRFQ GINERWHLQV DASLQVDQEM VTQGHSGGAN SANHSAPAPG  120
RRHGYEGSSS RRCRKASSSD EMLPDQVEDE VEVEAEAQVK QPLPAKGERS SDGAVKDTEQ  180
GAWGRRLRPR TQVTKTPITL SSSSSSSSSD SEETDTNTVG GSSESEEMDI NTVDAPAPHT  240
PTPQFVVELK KCHFVKQNGQ YLNVPMEFGV VHRYTEKKKV LLRMGGESWA VNLKHGLTPT  300
GRPRTSLRYG WDQFRVDNRL RAGETCFFRA LPGDDGGDHH VLKVEVRRLD GSYAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188665.10.0uncharacterized protein LOC109774366
TrEMBLA0A3B6LNQ70.0A0A3B6LNQ7_WHEAT; Uncharacterized protein
STRINGTraes_5BL_F17BA2960.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]