PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_E86F89671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 29932.6 Da PI: 6.0985 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 109 | 154 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N +f Lr +P+ +++Ka+ L A YI +L Traes_5BL_E86F89671.1 109 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 154 89************************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.989 | 105 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-15 | 107 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.28E-12 | 108 | 159 | No hit | No description |
Pfam | PF00010 | 5.0E-10 | 108 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-16 | 109 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-10 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MDDELLSPCS SFFPVSPPSG QFEHHHHQFI QFASCEVPEQ WLLGDVAVPA KSEDAGDLWP 60 AGSLLSTDSE ISELPAASLP ASTESTPRPA AAKQRGRKPG PRPEGPTVSH VEAERQRRDK 120 LNRRFCDLRA AVPTVSRMDK ASLLADAAAY IAELRARVAR LEDESKQAAA ARWDTNSGSL 180 GGGGASFQHF LAGDETVEVR MVGRDAAALR VTTAAGSAPY APARLMSPLR SLEMQVQHAC 240 VSRVQGATVQ DVVVDVPAAL QHDDGAALRS ALLQRLRDSA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_B | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_E | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_F | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_G | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_I | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_M | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
5gnj_N | 6e-18 | 108 | 167 | 7 | 66 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194708.1 | 0.0 | transcription factor MYC2-like | ||||
TrEMBL | A0A3B6LQG3 | 0.0 | A0A3B6LQG3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_E86F89671.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-16 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|