PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_E491AA5F3.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 628aa MW: 66037 Da PI: 7.1769 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 297 | 356 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Traes_5BL_E491AA5F3.1 297 SKYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 356 89*******************655454478446*************************98 PP | |||||||
2 | AP2 | 40 | 9.9e-13 | 401 | 450 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++grW A+I +s +k +lg+f + +Aa+a++ a+ k++g Traes_5BL_E491AA5F3.1 401 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 450 9***************999754...5**********99************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.44E-16 | 297 | 365 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.68E-20 | 297 | 365 | No hit | No description |
Pfam | PF00847 | 1.1E-12 | 297 | 356 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-16 | 298 | 365 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.23 | 298 | 364 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-28 | 298 | 370 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 299 | 310 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.94E-13 | 399 | 460 | No hit | No description |
SuperFamily | SSF54171 | 3.66E-16 | 399 | 459 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-17 | 400 | 458 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.149 | 400 | 458 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-29 | 400 | 464 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-7 | 401 | 450 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 440 | 460 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 628 aa Download sequence Send to blast |
MTNGGHSMSG ASIAGGAGGW LGFSLSPHVA MDAAAGSGIV DMAGHHHAHH GGVYYHPDAV 60 ASSPMSFYFG GGDNVSAASG GYYSGISALP LRSDGSLCLA DALRRSEQKH HGAEVSAPPK 120 LEDFLGASPA MALTLDNSGY YYGGQGHGHG DAGEGQHQLP SAMMPGSGGH HMYYDAHAAL 180 LDEQAAATSA AMEAAGWMAR AGDVYEVDGG NGEDGGGAIV TAGHDNPGGY VHPLTLSMSS 240 GSQSSCVTMQ QSAAQAHAYV GQATAASKKR GAGAGAGQNK QPVVHRKCID TFGQRTSKYR 300 GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGASTH 360 INFPVEDYQE ELEVMKNMTR QEYVAHLRRK SSGFSRGASM YRGVTRHHQQ GRWQARIGRV 420 SGNKDLYLGT FSAEADAAEA YDVAAIKFRG LNAVTNFDIN RYDVDKIMES STLLPGDQVR 480 RRKDGPDDSA AVVASAAAAL VQAGSATDYW RQPAAVTTDE HSRHHLGLLS SESFSLLRGV 540 VSVDGDAAGA QQGQGNRMSG ASSLATSLSN SREQSPDQGG GLAMLFARPA APKLASSLPM 600 GTWVSSPAPA RPGVSVAHMP MFAAWADA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 0.0 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156625.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q84Z02 | 1e-158 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A3B6LSJ2 | 0.0 | A0A3B6LSJ2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UNN0 | 0.0 | A0A446UNN0_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_E491AA5F3.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-111 | AP2 family protein |
Publications ? help Back to Top | |||
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