PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_DF8EC4A24.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 657aa    MW: 73517.1 Da    PI: 6.8183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_DF8EC4A24.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.45.2e-1102846552374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cA+a + +d++   +lL++++ ++sp+gd+ qRla+y++++L+arla+++s++y++l +++ts   s++ l+++kl+  ++P
  Traes_5BL_DF8EC4A24.2 284 TTLLIHCAQAAAIDDHRGSGELLKQIRRHSSPHGDAGQRLAHYIANGLEARLAGTGSTVYRSLVARRTS---SADMLKIFKLYGTACP 368
                            689****************************************************************99...9*************** PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            ++++s +  N+aIl+a+++  + vHi+D++i  G+QWp +lq +++R++gpp++RiT+++ p++g   +e+le+tg+rL+++A+ ++v
  Traes_5BL_DF8EC4A24.2 369 FIRMSRFYSNEAILDAAAKGvTSVHIVDYGIDWGFQWPIFLQRISKRDGGPPRIRITAIDLPQPGfrPAERLEATGRRLSEYAKMFHV 456
                            ***************987776*******************************************9*********************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfe+++ +a +++++++e+Lr+++++ l+Vn+ +++ +++de+v+ es+r++vL+++++++P+ ++++  +  +n++ F++rf eal 
  Traes_5BL_DF8EC4A24.2 457 PFEYRA-IAAKWDAIRVEDLRIDKDDLLIVNCLFRMRHMMDETVTDESPRKTVLNTIRKMNPHRFIHAVVNGTYNAPFFVTRFKEALF 543
                            ******.799****************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            y+s+l+d+lea++p+++e+r+ +Ere++gre+ nvvaceg+er+er et+++W+ r  +aGF++vpl ++ +k+a++ + k + + + 
  Traes_5BL_DF8EC4A24.2 544 YFSSLYDMLEATAPPADEHRQLIEREYFGREVLNVVACEGTERVERPETYKQWQVRNLRAGFRQVPLLQESVKKARYKVIKSYHRDFF 631
                            ******************************************************************************99999899** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            v+e+++++++gWk+r + ++S W+
  Traes_5BL_DF8EC4A24.2 632 VDEDNKWMLQGWKGRVIGALSTWK 655
                            ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.013257635IPR005202Transcription factor GRAS
PfamPF035141.8E-107284655IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MGSCEDVEYG DVFSVPNPAA APAYALDFSL HHHYHHQQQQ QLRFPPSSYG FHGLPAGPAA  60
HYQPSPPQSA LIGSTPSPVS TTTDLGSPEE ASDDAVLAYI NQFLLEDDDD DESSAPGAAA  120
APARDSALLA VAKPFVDIIA DAKPAYQHSS WTDPCCAFAG MGGGSPDMFV SSRQSSCQLV  180
PCDSVKVEEE CAVHKGRKNR HGDDDLEPED ERRRKQLALS EEETVREMFD KVLLCNGVNC  240
ILQSPLPAEA EISSVYVKGS GNRRGRKKGK TGVPTVEEES VDLTTLLIHC AQAAAIDDHR  300
GSGELLKQIR RHSSPHGDAG QRLAHYIANG LEARLAGTGS TVYRSLVARR TSSADMLKIF  360
KLYGTACPFI RMSRFYSNEA ILDAAAKGVT SVHIVDYGID WGFQWPIFLQ RISKRDGGPP  420
RIRITAIDLP QPGFRPAERL EATGRRLSEY AKMFHVPFEY RAIAAKWDAI RVEDLRIDKD  480
DLLIVNCLFR MRHMMDETVT DESPRKTVLN TIRKMNPHRF IHAVVNGTYN APFFVTRFKE  540
ALFYFSSLYD MLEATAPPAD EHRQLIEREY FGREVLNVVA CEGTERVERP ETYKQWQVRN  600
LRAGFRQVPL LQESVKKARY KVIKSYHRDF FVDEDNKWML QGWKGRVIGA LSTWKPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4727765612379Protein SCARECROW
5b3h_D4e-4727765612379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507920.0AK250792.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf94i06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179545.10.0scarecrow-like protein 9
SwissprotQ9XE581e-161SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A3B6LWS80.0A0A3B6LWS8_WHEAT; Uncharacterized protein
TrEMBLA0A446UU550.0A0A446UU55_TRITD; Uncharacterized protein
STRINGTraes_5BL_DF8EC4A24.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-161GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]