PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_DB5410008.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 281aa MW: 30052.9 Da PI: 6.367 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.7e-08 | 131 | 175 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a +L + +Y+k L Traes_5BL_DB5410008.2 131 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 175 99***********************7.....59**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.54E-15 | 124 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-10 | 124 | 180 | No hit | No description |
PROSITE profile | PS50888 | 15.694 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-14 | 128 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-5 | 131 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-9 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAGQPPQGPE DDFLDQFFSL TNSLSAAGRP SGDQPFSLAL SLDAASDASG SRGGIGDDAG 60 NPAERDGVQL PGLFPPVFGG GLQPPHLRPS HPPPQMFHAQ QPKQGGPAGG PQPPAPRPKV 120 RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAVMLDEILD YVKFLRLQVK 180 VLSMSRLGGA GAVAQLVSDI PLSVKGEASD GGSKQQIWEK WSTDGTEKQV AKLMDEDIGA 240 AMQFLQSKAL CMMPVSLAMA IYDTQHSQDG QPVKPEPNNT A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 140 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK104412 | 0.0 | AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191801.1 | 0.0 | transcription factor UNE12-like | ||||
Swissprot | O22768 | 5e-75 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A3B6LV15 | 0.0 | A0A3B6LV15_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446URH5 | 0.0 | A0A446URH5_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_DB5410008.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 1e-63 | bHLH family protein |
Publications ? help Back to Top | |||
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