PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_DB5410008.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 281aa    MW: 30052.9 Da    PI: 6.367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_DB5410008.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08131175554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h+++Er RR+ri +++  L+el+P+       K + a +L +  +Y+k L
  Traes_5BL_DB5410008.2 131 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 175
                            99***********************7.....59**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-15124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-10124180No hitNo description
PROSITE profilePS5088815.694126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14128186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5131175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-9132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGQPPQGPE DDFLDQFFSL TNSLSAAGRP SGDQPFSLAL SLDAASDASG SRGGIGDDAG  60
NPAERDGVQL PGLFPPVFGG GLQPPHLRPS HPPPQMFHAQ QPKQGGPAGG PQPPAPRPKV  120
RARRGQATDP HSIAERLRRE RIAERMRALQ ELVPNTNKTD RAVMLDEILD YVKFLRLQVK  180
VLSMSRLGGA GAVAQLVSDI PLSVKGEASD GGSKQQIWEK WSTDGTEKQV AKLMDEDIGA  240
AMQFLQSKAL CMMPVSLAMA IYDTQHSQDG QPVKPEPNNT A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191801.10.0transcription factor UNE12-like
SwissprotO227685e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3B6LV150.0A0A3B6LV15_WHEAT; Uncharacterized protein
TrEMBLA0A446URH50.0A0A446URH5_TRITD; Uncharacterized protein
STRINGTraes_5BL_DB5410008.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]