PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_DA72CE20D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 344aa MW: 36094.6 Da PI: 5.1061 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.3e-14 | 127 | 178 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ Traes_5BL_DA72CE20D.2 127 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YAQRGDQASIVGGAINFVKELE 178 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-14 | 125 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.83E-14 | 125 | 182 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-17 | 126 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.075 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-11 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MALEAVFSRA AAGLFGRCAM AGTGAGGAWN GLFGGGEGLA GLDGGDWDAA AAAAFSSMLL 60 PQAAFQELDI SAVAAATAPQ EESVGGGEMS AAGVGQDDAA PVAAAATGRR KRRRTRTAKN 120 SEEVESQRMT HIAVERNRRK QMNEYLAALR SLMPPSYAQR GDQASIVGGA INFVKELEQL 180 LQTLETHRRT REPAAAVDGG EAPPPPFANF FTFPQYSMSA TSAPAPPPAT DEGEGADGCP 240 GAEASGSKPS AVADVEVTMV ESHANLRMLS RRRPRQLLRL LVGLQGHRLT VLHLNMSSAG 300 HMVLYSLSLK VEDDCQLTSV DEIATAAHQI VEKIQEEQEL TVAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 113 | RKRRR |
2 | 109 | 114 | RKRRRT |
3 | 127 | 138 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT056041 | 9e-87 | BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds. | |||
GenBank | EU951970 | 9e-87 | EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ728035 | 9e-87 | KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148028.1 | 0.0 | transcription factor bHLH94-like | ||||
Swissprot | Q9C7T4 | 8e-73 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A3B6LNC7 | 0.0 | A0A3B6LNC7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_DA72CE20D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 8e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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