PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_D177DD0F9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 64aa    MW: 6881.53 Da    PI: 4.3011
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_D177DD0F9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.6e-112347126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           +k+elC+ +   G C+yG+rC+FaHg
  Traes_5BL_D177DD0F9.2 23 QKMELCNKWEG-GACSYGGRCRFAHG 47
                           599******88.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-111950IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-72250IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-72248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5632249IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-92347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
AGEDEAKGDG EVVELEAYRQ GTQKMELCNK WEGGACSYGG RCRFAHGLQD DGFLISLTNQ  60
GVQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703064e-88HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.15e-27putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN87e-17C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A077S0I21e-37A0A077S0I2_WHEAT; Uncharacterized protein
TrEMBLA0A446PQ891e-37A0A446PQ89_TRITD; Uncharacterized protein
STRINGTraes_5BL_D177DD0F9.21e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-16C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]