PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_CF90A7CAE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 334aa    MW: 34890 Da    PI: 5.5941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_CF90A7CAE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27.3e-14119165354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++ e++k+L
  Traes_5BL_CF90A7CAE.1 119 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVLEHVKEL 165
                            78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.526116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-14119168No hitNo description
SuperFamilySSF474596.15E-15120176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-14120174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.1E-6217264No hitNo description
SuperFamilySSF550217.32E-5217264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MWEGGVHGSH QDAARLLPPW LGGGPAAFAD PVGTAVGSGF GVGGYACDVV GQAGGVFGFG  60
FEAAVVAAQQ QHHQQRAAEA AAAGGSKAVV SGLLGSLQAE LGRMNAGEIM DAKALAASRS  120
HSEAERRRRQ RINGHLARLR SLLPNTTKTD KASLLAEVLE HVKELKRQTS AMTMMAAAVG  180
GDEDDNAAPV QMLPTEADEL SVDAAEDGEG RLVVRASLCC EDRPDLIPDI IRALAALRLR  240
AHRAEITTLG GRVRSVLLIT AEEGEEGGDE GGDGIDEECT ASHRRHECIA SVQEALRGVM  300
DRRAACSNDT SSSGGGGSIK RQRMNYGAHE QCSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3680220.0AK368022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2066I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188174.11e-172transcription factor bHLH30-like
SwissprotQ9S7Y15e-68BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A3B6LL890.0A0A3B6LL89_WHEAT; Uncharacterized protein
TrEMBLA0A446UBB20.0A0A446UBB2_TRITD; Uncharacterized protein
STRINGTraes_5BL_CF90A7CAE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]