PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_C8BEC527F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 776aa    MW: 86938.2 Da    PI: 7.2403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_C8BEC527F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS380.32.3e-1164017721374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++ L++cA+av+++d + a++lL+++++++  +gd  qRla++f+++L+arla+++s+ y+ l +++t+    s+ l+ ++l++ ++
  Traes_5BL_C8BEC527F.1 401 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKGYHLYFAAC 485
                            5789************************************************************999999...8999*********** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P+ ++sh++ Nq+Il  ++++++vHiiDf+i  GlQWp+L++ L++R++gpp lRiTg++ pe+g   +e++eetg+rLa++A++++v
  Traes_5BL_C8BEC527F.1 486 PFKRLSHFLSNQTILSMTKNAKKVHIIDFGIYFGLQWPCLIRRLSKREGGPPILRITGIDVPEPGfrPTERIEETGQRLAEYAKKFEV 573
                            ****************************************************************9*********************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfe++  +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal 
  Traes_5BL_C8BEC527F.1 574 PFEYHG-IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALF 660
                            ******.7******************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            ++salfd+lea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++ +ak  ++ ++ + + 
  Traes_5BL_C8BEC527F.1 661 HFSALFDMLEATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVIKAKDKVKDIYHKDFV 748
                            ***********************************************************************************888** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            ++e+sg+l++gWk+r +++++ W+
  Traes_5BL_C8BEC527F.1 749 IDEDSGWLLQGWKGRIIYAITTWK 772
                            ***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.492375752IPR005202Transcription factor GRAS
PfamPF035148.0E-114401772IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MTSTPQPPRD LAHAAPPAQD LTGLGLGLAA ARSLRHRPPR QGSMPSGSVE HQTISGSLIH  60
SMIQFCGAPE YFMFNDPQPV IPHHVAAEPS HNAPVATLSR ATNTETDNPE DWEFISDESL  120
NYISRMLMEE DIDEKVSVYQ EESATLRATA KPFYDILGHK FPPSPDRTLT TWSLDSPSES  180
SSSGHAQSLS SVGTSGSIGG AVHSNQCHNV GHSEQLEAYR GLCGRSSQPL VAPSSGVSDA  240
AESLEDPLIT NGRIPEYLFE SLPTWDFRRG VEEAQKFLPG GDKLVIDLEA AGVSKPQEAV  300
KAIPFNVSRT EVLKAKKNRQ SEDLDLIEGR NIKQSAFCSD EPDDWVEMFD DLFRQTEKKA  360
TVLREKMRSE ASKNSQVTQA KGTTGVKTRG RKPTKNDVVD LRTILIHCAQ AVAADDRRTA  420
NELLKQIKQH SKVNGDGSQR LAFCFAQGLE ARLAGTGSQQ YHRLVAKRTT ASDMLKGYHL  480
YFAACPFKRL SHFLSNQTIL SMTKNAKKVH IIDFGIYFGL QWPCLIRRLS KREGGPPILR  540
ITGIDVPEPG FRPTERIEET GQRLAEYAKK FEVPFEYHGI ASKWETIRAE DLKVGKDEVV  600
IVNCLYRFRN LIDETVAVDS PRNRVLNTIR QVNPAIFIHG IVNGSYSVPF FITRFREALF  660
HFSALFDMLE ATVPRDDDQR RLIERDLFGR EALNVIACEG SDRVERPETY KQWQVRNLRA  720
GFVQSPLNQD IVIKAKDKVK DIYHKDFVID EDSGWLLQGW KGRIIYAITT WKHNNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-484057728375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627960.0AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184239.10.0scarecrow-like protein 9
RefseqXP_020184240.10.0scarecrow-like protein 9
RefseqXP_020184241.10.0scarecrow-like protein 9
TrEMBLA0A3B6LHX50.0A0A3B6LHX5_WHEAT; Uncharacterized protein
TrEMBLA0A446U3730.0A0A446U373_TRITD; Uncharacterized protein
STRINGTraes_5BL_C8BEC527F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-172GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]