PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_C3F3A871A.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1144aa MW: 124377 Da PI: 4.8374

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_C3F3A871A.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	378	400	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C+ +F ++s +++H+ + H Traes_5BL_C3F3A871A.1 378 ECKKCNLTFEDQSAYVQHQLSfH 400 5******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.58E-5	226	273	IPR016177	DNA-binding domain
PROSITE pattern	PS00028	0	379	400	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1144 aa Download sequence Send to blast
RRRCRRPPWA RRWCPWWTLA RCPSRSSWRS RPHRPTPSTP AAGAATPTSS RPLRSIAPSS 60 TRVPAPASRP SPATNLPHNL TPSTASSSAV AAPTEEDSEN RLIVFHLQQL FARDDPSYLP 120 PPPPIPLQQL PPIPIPAPTI PVPTPPVASV PIQQLPDPDR DLTNPKGVAV DLARLAELVD 180 PYGEEIRNRT AGLALESELL GFMNELEGQW GSRRRRRKFV EAAIFGDHLP RGWKLILGIK 240 RKERAAWINC RRYVSPRGHQ FATCREVSSY FMSLLGYVEA KPTTVQNNDM GVRDLSAVNV 300 GVRDLSAVNV GVQNNDVGVR DLSAVNTAGL HQQNDSTRDM QSAVSATSVT LSIHNGDSQG 360 QRQKPYKDEA PIEAVRKECK KCNLTFEDQS AYVQHQLSFH QRKAKRRKVD KSIGLGVSKD 420 GKLETQESQR TSEDKPGYFG HGVADVKSQG QSPAELFGGA SSGDVGAQLS LAAAPCGLQE 480 ITALPEQVEE PSAGEPVSGH QDLPQETTGL PQQEKELSAT EPFAGHQKEH VDNSGDHEIH 540 DGACHIAEEP LAFDVGSNLS TCKSPEPEVH EHDSSKDLEF SIADCSGSFD RSHEISKIPQ 600 DVPCTADAPG EKSCSDDPMD CADITLPKQV PEHCDMLDHK FRGFPGGTGF NDQVGNNPLS 660 ANLDEPDLSS NSMEVDNSKI ACKFGDMLNS TSSEYDKPVV DQIDRGVTAL KNDAINIDDG 720 MNIDVRIKEV NLNSCLDTIS SPVSGANCET SNALHDGNRS SILAQCFGGS SNDDNVCQDE 780 SFVNQNNVSK AEIFVNQSND MVYQSNLNMN PISPPQISVD YFTNCSMNSE IKNNDNRRDD 840 NAKEQFVNSR NISSNEPGFD AEAYNNDIFT GAMAETSFAQ LNNAMNMKTD YSSCYSISDL 900 NTLTGGTATD GIDFHGMRSS FVSGSTSRSE PNELDFDIKG SMLEALERSD SDLETQYNGG 960 DPAIDSLPAA GTSGTSVDDF MSMHTNFGSL TSLVRSVEGG PMSRLIQDQC DLQLGFGAQK 1020 QQIYPSFEEH LRMASAGAPQ FGNMGRHNPM PVPVPVPEPT LMLGYEPTLM LGYAPQFGSC 1080 PPVQLGWDLS KMVGVLQSVC VWCNTRFQHF GTAEQQNDSV GFICPACKDK TSGHLGTLNN 1140 GSLL

Sequence ? help Back to Top

Protein Sequence Length: 1144 aa Download sequence Send to blast

RRRCRRPPWA RRWCPWWTLA RCPSRSSWRS RPHRPTPSTP AAGAATPTSS RPLRSIAPSS  60
TRVPAPASRP SPATNLPHNL TPSTASSSAV AAPTEEDSEN RLIVFHLQQL FARDDPSYLP  120
PPPPIPLQQL PPIPIPAPTI PVPTPPVASV PIQQLPDPDR DLTNPKGVAV DLARLAELVD  180
PYGEEIRNRT AGLALESELL GFMNELEGQW GSRRRRRKFV EAAIFGDHLP RGWKLILGIK  240
RKERAAWINC RRYVSPRGHQ FATCREVSSY FMSLLGYVEA KPTTVQNNDM GVRDLSAVNV  300
GVRDLSAVNV GVQNNDVGVR DLSAVNTAGL HQQNDSTRDM QSAVSATSVT LSIHNGDSQG  360
QRQKPYKDEA PIEAVRKECK KCNLTFEDQS AYVQHQLSFH QRKAKRRKVD KSIGLGVSKD  420
GKLETQESQR TSEDKPGYFG HGVADVKSQG QSPAELFGGA SSGDVGAQLS LAAAPCGLQE  480
ITALPEQVEE PSAGEPVSGH QDLPQETTGL PQQEKELSAT EPFAGHQKEH VDNSGDHEIH  540
DGACHIAEEP LAFDVGSNLS TCKSPEPEVH EHDSSKDLEF SIADCSGSFD RSHEISKIPQ  600
DVPCTADAPG EKSCSDDPMD CADITLPKQV PEHCDMLDHK FRGFPGGTGF NDQVGNNPLS  660
ANLDEPDLSS NSMEVDNSKI ACKFGDMLNS TSSEYDKPVV DQIDRGVTAL KNDAINIDDG  720
MNIDVRIKEV NLNSCLDTIS SPVSGANCET SNALHDGNRS SILAQCFGGS SNDDNVCQDE  780
SFVNQNNVSK AEIFVNQSND MVYQSNLNMN PISPPQISVD YFTNCSMNSE IKNNDNRRDD  840
NAKEQFVNSR NISSNEPGFD AEAYNNDIFT GAMAETSFAQ LNNAMNMKTD YSSCYSISDL  900
NTLTGGTATD GIDFHGMRSS FVSGSTSRSE PNELDFDIKG SMLEALERSD SDLETQYNGG  960
DPAIDSLPAA GTSGTSVDDF MSMHTNFGSL TSLVRSVEGG PMSRLIQDQC DLQLGFGAQK  1020
QQIYPSFEEH LRMASAGAPQ FGNMGRHNPM PVPVPVPEPT LMLGYEPTLM LGYAPQFGSC  1080
PPVQLGWDLS KMVGVLQSVC VWCNTRFQHF GTAEQQNDSV GFICPACKDK TSGHLGTLNN  1140
GSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	400	407	QRKAKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372273	0.0	AK372273.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2148N06.
GenBank	AK374678	0.0	AK374678.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3072I09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176734.1	0.0	uncharacterized protein LOC109762306
TrEMBL	A0A3B6LLX4	0.0	A0A3B6LLX4_WHEAT; Uncharacterized protein
STRING	Traes_5BL_C3F3A871A.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2687	14	19

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]