PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_C02570726.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 584aa    MW: 62622.3 Da    PI: 6.4656
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_C02570726.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.21.9e-1252155762374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsev 87 
                             +lLl+cAe v++++l +aq++L ++ ela+p g+++qR+aayf+eA +arl++s+ +ly+ lp  + + ++    +++aa+++f+ +
  Traes_5BL_C02570726.1 215 LTLLLQCAESVNADNLDEAQTALLEIAELATPFGTSTQRVAAYFAEAVSARLVSSCLGLYAPLPHASPAASRlvNGRVAAAFQVFNGI 302
                            579************************************************************7776666665677788999****** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+p
  Traes_5BL_C02570726.1 303 SPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLP 386
                            **************************************************************....********************** PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            fef + va++  +l++e+L v ++Ea+aV++ +  h+l+d ++s ++    +L l+k+l Pkvv++veq++ h ++sFl+rf+ea++y
  Traes_5BL_C02570726.1 387 FEFCP-VADKAGNLDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLCLIKRLAPKVVTMVEQDLRH-TGSFLARFVEAIHY 466
                            *****.7*************************9..999999999999....**********************.889*********** PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            ysalfdsl+a+++++s er++vE++ll+rei+nv+a  g +r+ + + ++ Wr+rl ++GF++++l  +aa+qa lll +++sdgy++
  Traes_5BL_C02570726.1 467 YSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVGGPSRTGDVK-FGCWRDRLARSGFGAASLAGSAAAQAALLLGMFPSDGYTL 553
                            *****************************************999887.**************************************** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                             ee+g+l lgWkd +L+++SaWr
  Traes_5BL_C02570726.1 554 VEENGALKLGWKDLTLLTASAWR 576
                            **********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.575188556IPR005202Transcription factor GRAS
PfamPF035146.6E-123215576IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MVRKRPATDM DLPPPRRHVT GDLSDMTAGP PVLSSATAQL PALPSQLLPP FQLQQQVDHM  60
DVAAAAAPAQ AGEAANTTAF VDGIIRDIIG SSGAGVSVAQ LIHNVREIIH PCNPGLASLL  120
ELRLRSLLAS DPAPPQQHQP ALLPNAPMPM AALPPPPPDK RRREEEREPN NPPQSPKPPS  180
AEETAAAAAA ASAAVKERKE GQRRKQRDEE GLHLLTLLLQ CAESVNADNL DEAQTALLEI  240
AELATPFGTS TQRVAAYFAE AVSARLVSSC LGLYAPLPHA SPAASRLVNG RVAAAFQVFN  300
GISPLVKFSH FTANQAIQEA FEREERVHII DLDIMQGLQW PGLFHILASR PGGPPRVRLT  360
GLGASMDALE ATGKRLSDFA DTLGLPFEFC PVADKAGNLD PEKLGVTRRE AVAVHWLHHS  420
LYDVTGSDSN TLCLIKRLAP KVVTMVEQDL RHTGSFLARF VEAIHYYSAL FDSLDASYGE  480
DSPERHVVEQ QLLSREIRNV LAVGGPSRTG DVKFGCWRDR LARSGFGAAS LAGSAAAQAA  540
LLLGMFPSDG YTLVEENGAL KLGWKDLTLL TASAWRPMHA SSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.01985773380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598270.0AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186306.10.0protein SCARECROW 1-like
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A3B6LJP00.0A0A3B6LJP0_WHEAT; Uncharacterized protein
TrEMBLA0A446U3J30.0A0A446U3J3_TRITD; Uncharacterized protein
STRINGTraes_5BL_C02570726.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]