PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_B820523A7.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 47044.8 Da PI: 6.7978 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.4e-11 | 252 | 300 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a ++ +Ka++L + ++Y+k Lq Traes_5BL_B820523A7.2 252 HSIAERLRRERIAERMKALQELVPNA--NKWLQTDKASMLDEIIDYVKFLQ 300 99***********************7..48888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.02E-13 | 245 | 304 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-16 | 245 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.399 | 247 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-15 | 251 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-8 | 252 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-12 | 253 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MQPTTREMQA MAAAGQISLD DLRSGHAGVN NGGAGGVHDD FLDQMFGSLP PSAWHDLAAG 60 TKPEDGAQAD GMQQQLFGGP YDDSMMLASR LRQHQISGGP GGGAASAKQM VLRQLADLRQ 120 GHHNNMLLQG MGRSPSIGGG GGEGGLLLPL TLGNGGSGGD VQALLKAAAN SAGGDAGVFG 180 GFAGSLQQQQ HFQPHPQQQT APMPSQTFGG VGGAPGGGAQ PQQQAGGGGG GGAPAPPRQR 240 VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKW LQTDKASMLD EIIDYVKFLQ 300 LQVKTSMPTH TQVLSMSRLG GAAAVAPLVA DMSSEGRGGA AGGAADGSDG LTVTEQQVAK 360 LMEEDMGAAM QYLQGKGLCL MPVSLASAIS SATCQLRPPA AAAGGPFTAA QHMSAAMRMS 420 VGDGGVPASP SMSVLTAQSA MANGGACAND GEGSHPKDAA SVSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 256 | 261 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005784 | 8e-57 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. | |||
GenBank | AP014965 | 8e-57 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 8e-57 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146637.1 | 0.0 | transcription factor bHLH66-like isoform X1 | ||||
Swissprot | Q9ZUG9 | 9e-71 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A3B6LMX4 | 0.0 | A0A3B6LMX4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_B820523A7.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 7e-42 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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