PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_B6C71B544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 383aa MW: 42131.8 Da PI: 11.5948 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 55 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Traes_5BL_B6C71B544.1 55 SVHRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 114 689******************888866656446*************************98 PP | |||||||
2 | AP2 | 52.1 | 1.6e-16 | 157 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Traes_5BL_B6C71B544.1 157 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 208 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.99E-17 | 55 | 124 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-16 | 56 | 123 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-13 | 56 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.231 | 56 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-26 | 56 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-5 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.46E-20 | 157 | 218 | No hit | No description |
Pfam | PF00847 | 1.6E-12 | 157 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 157 | 218 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-18 | 158 | 217 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 158 | 216 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 158 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-5 | 198 | 218 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MAKPRKNSAA AAAAAAANSN AIASAAADAG ADVRAKPKKR TRKSVPRESP SQRSSVHRGV 60 TRHRWTGRFE AHLWDKNSWN ESQNKKGKQV YLGAYDEEEA AARAYDLAAL KYWGPDTILN 120 FPLSIYEEEL KEMEGQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG 180 NKYLYLGTYA TQEEAAMAYD MAAIEYRGLN AVTNFDLSRY IKWLRPGAAD VXXXXXXRPE 240 RAPDAGQPRG AGAPRDRPRR HGVPARPPPA GHGGRHDRGG GGGRGGGAVP AAAGKGGHAR 300 PHPHHVRAQP AAAVAQVQGD DRADVGRREQ HHHVLLVHVH AAAAAGHQGR RRLAAVQLPG 360 GHPDLLRQRR RRGLHRRRRP LLR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 272 | 280 | GGRHDRGGG |
2 | 349 | 371 | RRRLAAVQLPGGHPDLLRQRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111617 | 0.0 | AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 1e-136 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3B6LMK3 | 1e-164 | A0A3B6LMK3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UAP9 | 1e-164 | A0A446UAP9_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_B6C71B544.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 7e-96 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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