PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_B55F708EC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 286aa MW: 31292.5 Da PI: 4.9575 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.2e-08 | 160 | 204 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P Kl+ ae+L++A +++k Lq Traes_5BL_B55F708EC.1 160 SAAARERRRRISEKTAELSRLIPGgH------KLNTAEMLQEAARHVKLLQ 204 5677999999*************955......****************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.652 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-11 | 158 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-9 | 158 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 160 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.38E-5 | 170 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MSMAPLSFRP TATARPRFHC VDDGADRDVS FLQDVHPDVG DALLGFVYDP LDPAVNAGLD 60 EFLNIPPYGD DDDEDGQQRC AKKPRAGGFE EDSWFDFTAA DGSLAQKWDN ACTQQVPEFL 120 PEFVLPLPPP PPPPPQVYPP FVRGADAKKL QAAGNGSSQS AAARERRRRI SEKTAELSRL 180 IPGGHKLNTA EMLQEAARHV KLLQAQVGML TLLNNIEDEK VPAMAQEHMH ALLVCGGMQE 240 RLAAEGKCLV PKVLVDTIAK DAAVRSNALV NRDLTRFTES LFAEKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239355.1 | 1e-110 | uncharacterized protein LOC104585091 | ||||
TrEMBL | A0A3B6LK72 | 0.0 | A0A3B6LK72_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_B55F708EC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34820.1 | 4e-20 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|