PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_AAC9C7238.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 507aa    MW: 54217.1 Da    PI: 8.1632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_AAC9C7238.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.12.8e-17222271255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + +h++ E+rRR++iN++f+ Lr+llP+     ++K +Ka+ L +++eYI+ Lq
  Traes_5BL_AAC9C7238.2 222 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 271
                            578*************************8....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.2E-24219292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.482220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18220295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-16222275No hitNo description
PfamPF000101.4E-14222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-13226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGIQGNKGTH DFLSLYAPAA AAAAKDSSLQ LHDSKPPAAS QGFFLKTHDF LQPLEKPAAS  60
APSGADRQQQ QPQTTKHALP GGIGTFSVTR QAPGAAGPQS AAAAAVVVVK PEPPPFVLWG  120
QPTASQPPRA QGHHHQWTLP FAGAGQAATA SRKHPAERKR RGGGGFMDSG SRSSGGAGFD  180
DDDGLAARRE VSSSLQELAV RVDAKGGSCS GSGTDQLPNT PKSKHSATEQ RRRSKINDRF  240
QILRDLLPHT DQKRDKATFL LEVIEYIRFL QEKAQKYEAS FPEWNQENAK LLPWSNMYFR  300
SSWKNAQSKG QIAEDASPDP SQFIRNGASP GFNITGKLDD NHTAVASAAI SGAPDQAETD  360
HMASVSCRSA DTPTNIMNNV SPQSQPQWAN PSGVDDCAVN SDVLNNQQLM IDEGTISVSS  420
QYSQELLNTL AHALQSSGID LSQANISVQI NLGKRAVKRP TAGQSSSFKE HIDLAPTNEM  480
MGHQQTMLGN AAEELPHAAK RYKPGNT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537240.0AK353724.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150022.10.0transcription factor BIM2-like isoform X1
TrEMBLA0A446UCT40.0A0A446UCT4_TRITD; Uncharacterized protein
STRINGTraes_5BL_AAC9C7238.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-60BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]