PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_AAC9C7238.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 507aa MW: 54217.1 Da PI: 8.1632 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.1 | 2.8e-17 | 222 | 271 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h++ E+rRR++iN++f+ Lr+llP+ ++K +Ka+ L +++eYI+ Lq Traes_5BL_AAC9C7238.2 222 KSKHSATEQRRRSKINDRFQILRDLLPHT----DQKRDKATFLLEVIEYIRFLQ 271 578*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-24 | 219 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.482 | 220 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-18 | 220 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.04E-16 | 222 | 275 | No hit | No description |
Pfam | PF00010 | 1.4E-14 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-13 | 226 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MGIQGNKGTH DFLSLYAPAA AAAAKDSSLQ LHDSKPPAAS QGFFLKTHDF LQPLEKPAAS 60 APSGADRQQQ QPQTTKHALP GGIGTFSVTR QAPGAAGPQS AAAAAVVVVK PEPPPFVLWG 120 QPTASQPPRA QGHHHQWTLP FAGAGQAATA SRKHPAERKR RGGGGFMDSG SRSSGGAGFD 180 DDDGLAARRE VSSSLQELAV RVDAKGGSCS GSGTDQLPNT PKSKHSATEQ RRRSKINDRF 240 QILRDLLPHT DQKRDKATFL LEVIEYIRFL QEKAQKYEAS FPEWNQENAK LLPWSNMYFR 300 SSWKNAQSKG QIAEDASPDP SQFIRNGASP GFNITGKLDD NHTAVASAAI SGAPDQAETD 360 HMASVSCRSA DTPTNIMNNV SPQSQPQWAN PSGVDDCAVN SDVLNNQQLM IDEGTISVSS 420 QYSQELLNTL AHALQSSGID LSQANISVQI NLGKRAVKRP TAGQSSSFKE HIDLAPTNEM 480 MGHQQTMLGN AAEELPHAAK RYKPGNT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353724 | 0.0 | AK353724.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002F06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150022.1 | 0.0 | transcription factor BIM2-like isoform X1 | ||||
TrEMBL | A0A446UCT4 | 0.0 | A0A446UCT4_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_AAC9C7238.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP762 | 37 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-60 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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