PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_A85CEE3C1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 377aa MW: 41097.9 Da PI: 7.2774 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.4e-11 | 177 | 235 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l+ l+ + l+se+ Traes_5BL_A85CEE3C1.1 177 KRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATTLSAQLSLLQRDTSGLTSEN 235 9************************************************9999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.6E-17 | 173 | 237 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.909 | 175 | 238 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.3E-10 | 177 | 235 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-10 | 177 | 233 | No hit | No description |
SuperFamily | SSF57959 | 3.52E-11 | 177 | 228 | No hit | No description |
CDD | cd14703 | 1.10E-22 | 178 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MNKDRSRISA DGGGGDGLPP QPSRRSSTPP PEYDISRMPD FPTRNPGHRR AHSEILSLPD 60 DLDLCAPGGG DGPSLSDEND EELFSMFLDV DKLNSSCGPS SDQAESSSAA AAGGGEAARA 120 GHVMRPKHQH SQSMDESMSI KAEDLVGAPG MEGMSTVEAK KAVSAAKLAE LALVDPKRAK 180 RIWANRQSAA RSKERKMRYI GELERKVQTL QTEATTLSAQ LSLLQRDTSG LTSENSELKI 240 RLQNMEQQVH LQDALNDTLK TEVQRLKVAT GQMGNGGGML MNYGGMSQAP HQFGSNQQMF 300 HNSQSMQSLL ATHQLQQLQL HQQPQQQQQP MRPQHHHHQQ QQPLHPLQAQ LFQQAARDLK 360 MKGPMWGDGK SSGGGGI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00126 | DAP | Transfer from AT1G06070 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356433 | 0.0 | AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146433.1 | 0.0 | transcription factor RF2a-like | ||||
Refseq | XP_020146434.1 | 0.0 | transcription factor RF2a-like | ||||
Swissprot | Q69IL4 | 1e-154 | RF2A_ORYSJ; Transcription factor RF2a | ||||
TrEMBL | A0A3B6LNW7 | 0.0 | A0A3B6LNW7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_A85CEE3C1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4269 | 38 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-99 | bZIP family protein |