PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_A7C4DAE11.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 1454aa    MW: 163796 Da    PI: 7.0292
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_A7C4DAE11.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.91e-131108514531373
                   GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86  
                             l++lL++cA+av+++d+++++ ++ +l++++s +gdp qRl ay++e+L arla+s++++ykal+++e +   ss+ ++++++++e
  Traes_5BL_A7C4DAE11.2 1085 LKKLLISCARAVEAKDMSAVDMMVPELRKMVSVSGDPHQRLGAYIVEGLVARLASSGHSIYKALKCKEPR---SSDLMSYMHFLYE 1167
                             5799*****************************************************************9...999********** PP

                   GRAS   87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 
                             ++P++kf+++ aN aI eav+ge+++HiiDf+isqG+QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l  +g+rL+++A 
  Traes_5BL_A7C4DAE11.2 1168 ACPYFKFGYMSANGAIAEAVKGEDMIHIIDFGISQGAQWISLLQALATRPGGPPTVRITGIDDSLSAyaRGGGLDLVGRRLSHIAG 1253
                             ***************************************************************877788999************** PP

                   GRAS  171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 
                              ++vpfef+  va + +++e  +L v pgEalaVn+ l+lh+++de vs++++rd++L+lvkslsPkvv++veqe+++n+ +F +r
  Traes_5BL_A7C4DAE11.2 1254 LCKVPFEFHS-VAVAGDEVEEGHLMVIPGEALAVNFTLELHHIPDEAVSTANHRDRILRLVKSLSPKVVTLVEQELNTNTVPFKQR 1338
                             **********.7999*********************************************************************** PP

                   GRAS  257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 
                             f+e+l+yy+a+f+s++ +lpr+ +eri++E+++l+reivn+vacegaer+erhe ++kW+ rl+++GF+p pls+ +++++++ll+
  Traes_5BL_A7C4DAE11.2 1339 FAETLHYYTAIFESIDLTLPRD-DERINMEQHCLAREIVNIVACEGAERVERHEVFGKWKGRLTMVGFRPRPLSSLVNASIRTLLQ 1423
                             ******************9876.68************************************************************* PP

                   GRAS  343 kvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                              ++ + y++ e++g l+lgWk++pLv+ SaW
  Traes_5BL_A7C4DAE11.2 1424 SYSAN-YQLAEKDGVLYLGWKNKPLVVSSAW 1453
                             ***77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.34E-51331587IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.5E-17333502IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.2E-50333613IPR002182NB-ARC
PRINTSPR003642.2E-9352367No hitNo description
PRINTSPR003642.2E-9424438No hitNo description
PRINTSPR003642.2E-9521535No hitNo description
SuperFamilySSF520585.1E-216521027IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.3E-7722951IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5098567.78110591435IPR005202Transcription factor GRAS
PfamPF035143.5E-12910851453IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1454 aa     Download sequence    Send to blast
MEVGWAFKKK GEEWRSALQE SGAEHSYSLA VEYSGQVTSL VDLADLEEGL TNRSIYDSRF  60
SSTSFPTEEE VLGQHGSVFF DSTKGLWECR HCDWTHRLIS PCRNVDFPYY QRCGQVTMEA  120
PFGMGSLLGK LGMLLAPQGC RLPSRVKDRM HLLKEDVEDL SEYLAEMAEA EDLPLTAKRW  180
MKEARELAYD IEDNMDMCVQ PARASINTTR FICKIGRHVK IPKRLFSKRR LPKGLKWHKQ  240
IAYIAQVPAE HSGKIRSACK AIRVVIIRLP KRLKWYKHIM ELISDFRMYI QEAIERHERY  300
ELHRCSTFRR RFLPADRTLL TAYGGIADMV IDDRVSEFID SLDNDGDQQL KVVSVLGPGC  360
LGKTALAQVL YNKFGGQFDC TAFVRVSKRP DVVRLLREML MQVQGQQPTE YSEELDLAYS  420
IREHLQDKRY LIIIDDIWTA SAWDIISDAF PKGNHGSRVI TTTQMEEVAL TCCCYHSEHI  480
FEMRPLDHDH SRKLFFSILF GSESDCPKEL KEVTNKIFEL CGGLPLATIS IASLLSSQPV  540
IKMDLLTHLC DSLSSCLWIS PSEGTRQALN LSYNNLPHYL KICLLCLNMY PEGHTIWKDD  600
LVKQWVAEGF IHTTEGQDME KVAASYFNEL INRRFIQTLC SKYNNEVLSC TVHDVVHDLI  660
ADKCSEENFN MVIDSSRRNV ALPQKVRRLS LLFGDAKYVK TPANMRRSQV RSLTIFGLFE  720
SMPSISEFKL LRVLNLQLSS YGDRNAINLT GISDLFQLRY LKIACDICIQ LPNHMLGLQC  780
LETLVLDSEV IAVPWDIIHL PSLLHLSLLV MTNLLDWIGS MRLIGKLNNL RDLHLTYSVP  840
SSDHLKRSME ALGSQLSGHA NLKTLALVNG PCHKNAFVCD ALKVTVSWEG LVPPPVLEVF  900
EWSLHSCVLS RIPKWIGELG KLRILKIAVR DLPRDGIDAV RGLPALTALS LYLQTATVER  960
IVFDKVGFSV LNYFNLRCSV PCLKFEANAM PNLRKLKLGF NAPRARMDQH GAGTAISIDH  1020
LPSLKEICAK IGGACADTES ALATAISNHP SNPMINVQLV DYTFEGDELT HEQDEVLVEG  1080
QDGYLKKLLI SCARAVEAKD MSAVDMMVPE LRKMVSVSGD PHQRLGAYIV EGLVARLASS  1140
GHSIYKALKC KEPRSSDLMS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE DMIHIIDFGI  1200
SQGAQWISLL QALATRPGGP PTVRITGIDD SLSAYARGGG LDLVGRRLSH IAGLCKVPFE  1260
FHSVAVAGDE VEEGHLMVIP GEALAVNFTL ELHHIPDEAV STANHRDRIL RLVKSLSPKV  1320
VTLVEQELNT NTVPFKQRFA ETLHYYTAIF ESIDLTLPRD DERINMEQHC LAREIVNIVA  1380
CEGAERVERH EVFGKWKGRL TMVGFRPRPL SSLVNASIRT LLQSYSANYQ LAEKDGVLYL  1440
GWKNKPLVVS SAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-65108914548375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155316.10.0putative disease resistance RPP13-like protein 2
TrEMBLA0A3B6LR370.0A0A3B6LR37_WHEAT; Uncharacterized protein
STRINGTraes_5BL_A7C4DAE11.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-162scarecrow-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]